miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25489 3' -54.9 NC_005336.1 + 52121 0.7 0.747133
Target:  5'- --cGGCGCgCAgGCUGCGGAGcgcgcgcgcuacaucGCGCCGa -3'
miRNA:   3'- guuCUGCGgGU-UGACGCUUC---------------UGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 99198 0.72 0.64572
Target:  5'- uCGAGcCGCCCGAggaggugcguagggcCUGCGAGgcgcucGACGCCGc -3'
miRNA:   3'- -GUUCuGCGGGUU---------------GACGCUU------CUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 56841 0.72 0.662252
Target:  5'- --cGGCGCCCucggagGCGGAGGCGCUc -3'
miRNA:   3'- guuCUGCGGGuuga--CGCUUCUGCGGc -5'
25489 3' -54.9 NC_005336.1 + 132570 0.71 0.672554
Target:  5'- -cAGACGCCguGCgaccGCG-AGugGCCGg -3'
miRNA:   3'- guUCUGCGGguUGa---CGCuUCugCGGC- -5'
25489 3' -54.9 NC_005336.1 + 129313 0.71 0.693049
Target:  5'- -cAGGCGCCU--CUGUGGAGuACGCUGg -3'
miRNA:   3'- guUCUGCGGGuuGACGCUUC-UGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 16340 0.71 0.693049
Target:  5'- --cGGCGCCCuccGCgGCGggGugGCgCGu -3'
miRNA:   3'- guuCUGCGGGu--UGaCGCuuCugCG-GC- -5'
25489 3' -54.9 NC_005336.1 + 19018 0.71 0.693049
Target:  5'- gAAGGCGCCgGugU-CGGAGACGCgGu -3'
miRNA:   3'- gUUCUGCGGgUugAcGCUUCUGCGgC- -5'
25489 3' -54.9 NC_005336.1 + 35339 0.71 0.713336
Target:  5'- -cGGAUGCCCA---GCGAGGgcGCGCCGc -3'
miRNA:   3'- guUCUGCGGGUugaCGCUUC--UGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 95566 0.7 0.73334
Target:  5'- ---aGCGCCgCAGC-GCGGAGuCGCCGa -3'
miRNA:   3'- guucUGCGG-GUUGaCGCUUCuGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 39976 0.72 0.620879
Target:  5'- gGAGACGCCCGAgaagucGuCGgcGACGCCGc -3'
miRNA:   3'- gUUCUGCGGGUUga----C-GCuuCUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 81805 0.72 0.620879
Target:  5'- aCAGGAUGgugcaguaCCCGuugGCGAAGGCGCCGc -3'
miRNA:   3'- -GUUCUGC--------GGGUugaCGCUUCUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 134264 0.73 0.610538
Target:  5'- -cAGACGCUagaccugggCGACUGCGGAGAccccagaggcCGCCGa -3'
miRNA:   3'- guUCUGCGG---------GUUGACGCUUCU----------GCGGC- -5'
25489 3' -54.9 NC_005336.1 + 3501 0.77 0.36472
Target:  5'- gAAGGCGgCCGGCaGCGgcGGCGCCGc -3'
miRNA:   3'- gUUCUGCgGGUUGaCGCuuCUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 118062 0.75 0.451809
Target:  5'- gCAGGACGCCUguAGCgcccgcaagGCGcGGACGCCGc -3'
miRNA:   3'- -GUUCUGCGGG--UUGa--------CGCuUCUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 82453 0.75 0.470559
Target:  5'- gAAGACGCCCA--UGCGGAGGuucaggaugcacCGCCGc -3'
miRNA:   3'- gUUCUGCGGGUugACGCUUCU------------GCGGC- -5'
25489 3' -54.9 NC_005336.1 + 115665 0.75 0.480081
Target:  5'- gGAGGUGCCCuuCUGCGAcguGACGCCc -3'
miRNA:   3'- gUUCUGCGGGuuGACGCUu--CUGCGGc -5'
25489 3' -54.9 NC_005336.1 + 58395 0.75 0.499401
Target:  5'- --cGGCGCC--GCUGCGGuuGACGCCGg -3'
miRNA:   3'- guuCUGCGGguUGACGCUu-CUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 22233 0.74 0.539014
Target:  5'- -cAGACGCgCGGCUGCGAGaGCGCUu -3'
miRNA:   3'- guUCUGCGgGUUGACGCUUcUGCGGc -5'
25489 3' -54.9 NC_005336.1 + 6645 0.74 0.539014
Target:  5'- ---cACGUCCAcgaGCgcgGCGGAGACGCCGc -3'
miRNA:   3'- guucUGCGGGU---UGa--CGCUUCUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 124376 0.73 0.579642
Target:  5'- -uGGACGCgCGGCUGCGcGAGAUGCgGc -3'
miRNA:   3'- guUCUGCGgGUUGACGC-UUCUGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.