miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25489 5' -55.9 NC_005336.1 + 74399 0.66 0.906983
Target:  5'- -cCGACGGGCUcguGGuCGCGugccGGCGCCGg- -3'
miRNA:   3'- cuGCUGCUCGA---UC-GUGU----CUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 40590 0.66 0.906983
Target:  5'- uGCGcAUGAGCc-GCGCGGgcGCGCCGUc -3'
miRNA:   3'- cUGC-UGCUCGauCGUGUC--UGCGGCAc -5'
25489 5' -55.9 NC_005336.1 + 133726 0.66 0.906983
Target:  5'- -cUGGCGGGCgAGCGCuGGCGgacuacgcgaCCGUGg -3'
miRNA:   3'- cuGCUGCUCGaUCGUGuCUGC----------GGCAC- -5'
25489 5' -55.9 NC_005336.1 + 17497 0.66 0.906983
Target:  5'- aGACGACGGcGCUGuGCGCGGACuugaCCaUGa -3'
miRNA:   3'- -CUGCUGCU-CGAU-CGUGUCUGc---GGcAC- -5'
25489 5' -55.9 NC_005336.1 + 107683 0.66 0.906983
Target:  5'- -uCGACGAGCUAaggccGCACGuGGCcuGCCGg- -3'
miRNA:   3'- cuGCUGCUCGAU-----CGUGU-CUG--CGGCac -5'
25489 5' -55.9 NC_005336.1 + 19463 0.66 0.906983
Target:  5'- -uCGuCGAGCcgAGUGCGGACGgUGUGu -3'
miRNA:   3'- cuGCuGCUCGa-UCGUGUCUGCgGCAC- -5'
25489 5' -55.9 NC_005336.1 + 53349 0.66 0.906983
Target:  5'- cGugGACG-GCaAGCGCuucGCGCCGa- -3'
miRNA:   3'- -CugCUGCuCGaUCGUGuc-UGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 97802 0.66 0.906362
Target:  5'- uGCGACGAacaagaugcaGCUGGCcgugcgcgagcucGCGGACGCgcgcgCGUGg -3'
miRNA:   3'- cUGCUGCU----------CGAUCG-------------UGUCUGCG-----GCAC- -5'
25489 5' -55.9 NC_005336.1 + 96388 0.66 0.90067
Target:  5'- cGGCGAUGAacucgcggugGCgcgcGGCGCGGuCGCgCGUGg -3'
miRNA:   3'- -CUGCUGCU----------CGa---UCGUGUCuGCG-GCAC- -5'
25489 5' -55.9 NC_005336.1 + 130341 0.66 0.90067
Target:  5'- uGGCGuACGuGgUGGCGCGcGCGCCGa- -3'
miRNA:   3'- -CUGC-UGCuCgAUCGUGUcUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 123211 0.66 0.90067
Target:  5'- cGugGACGcGCU-GC-UGGACGCCGg- -3'
miRNA:   3'- -CugCUGCuCGAuCGuGUCUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 69852 0.66 0.90067
Target:  5'- cGCGACGcucGCguggugGGCACgcgcaAGACGCCGg- -3'
miRNA:   3'- cUGCUGCu--CGa-----UCGUG-----UCUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 50467 0.66 0.90067
Target:  5'- cGGCGGCGAGC--GCACGccGACGUCu-- -3'
miRNA:   3'- -CUGCUGCUCGauCGUGU--CUGCGGcac -5'
25489 5' -55.9 NC_005336.1 + 5653 0.66 0.90067
Target:  5'- cGACGGCGAGCcuguccgcGGC-CGGgaGCGCCGc- -3'
miRNA:   3'- -CUGCUGCUCGa-------UCGuGUC--UGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 66517 0.66 0.90067
Target:  5'- cACGuccACGAGCUgcgGGUGCGGGCGCgCGg- -3'
miRNA:   3'- cUGC---UGCUCGA---UCGUGUCUGCG-GCac -5'
25489 5' -55.9 NC_005336.1 + 30184 0.66 0.90067
Target:  5'- gGACGugGccGCgcaCGCGGuCGCCGUGg -3'
miRNA:   3'- -CUGCugCu-CGaucGUGUCuGCGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 108656 0.66 0.90067
Target:  5'- aGCGACG-GCU-GCACGGAacacaaGCuCGUGc -3'
miRNA:   3'- cUGCUGCuCGAuCGUGUCUg-----CG-GCAC- -5'
25489 5' -55.9 NC_005336.1 + 129734 0.66 0.900025
Target:  5'- cGCcGCGuGCUgcgcuucGGCGCAGAcgugaaCGCCGUGg -3'
miRNA:   3'- cUGcUGCuCGA-------UCGUGUCU------GCGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 57740 0.66 0.898078
Target:  5'- cGCGGCGAGCggcuaccuuuacgAGCGCGaccgcGCGcCCGUGa -3'
miRNA:   3'- cUGCUGCUCGa------------UCGUGUc----UGC-GGCAC- -5'
25489 5' -55.9 NC_005336.1 + 124767 0.66 0.89412
Target:  5'- cGCGGCGcccggGGCgcGCGCcGACGCCGc- -3'
miRNA:   3'- cUGCUGC-----UCGauCGUGuCUGCGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.