miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25489 5' -55.9 NC_005336.1 + 124767 0.66 0.89412
Target:  5'- cGCGGCGcccggGGCgcGCGCcGACGCCGc- -3'
miRNA:   3'- cUGCUGC-----UCGauCGUGuCUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 11660 0.66 0.89412
Target:  5'- cGGCGGCGcGCccaGGCGCGuGCGCCGc- -3'
miRNA:   3'- -CUGCUGCuCGa--UCGUGUcUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 28645 0.66 0.89412
Target:  5'- cGACGAuaUGGGCgacaCACAGACGCgGUc -3'
miRNA:   3'- -CUGCU--GCUCGauc-GUGUCUGCGgCAc -5'
25489 5' -55.9 NC_005336.1 + 123424 0.66 0.893453
Target:  5'- gGACGugguCGAGCUgcucgugcaggcgGGCGCGGACGUgaaCGUu -3'
miRNA:   3'- -CUGCu---GCUCGA-------------UCGUGUCUGCG---GCAc -5'
25489 5' -55.9 NC_005336.1 + 123534 0.66 0.890079
Target:  5'- cGugGugGAGCgcgagcgcaagacgGGCACGcACGgCGUGa -3'
miRNA:   3'- -CugCugCUCGa-------------UCGUGUcUGCgGCAC- -5'
25489 5' -55.9 NC_005336.1 + 64596 0.66 0.887338
Target:  5'- --aGACGGGCUccGGcCGCuggacGugGCCGUGu -3'
miRNA:   3'- cugCUGCUCGA--UC-GUGu----CugCGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 95252 0.66 0.887338
Target:  5'- cACGGCGGGCaGGUucGCGGACGCg--- -3'
miRNA:   3'- cUGCUGCUCGaUCG--UGUCUGCGgcac -5'
25489 5' -55.9 NC_005336.1 + 40224 0.66 0.887338
Target:  5'- aGACGAagcuCGAGCaGGC-CAcGACGUCGUa -3'
miRNA:   3'- -CUGCU----GCUCGaUCGuGU-CUGCGGCAc -5'
25489 5' -55.9 NC_005336.1 + 42425 0.66 0.887338
Target:  5'- aACGACGAGCUGcuggaguuccucGCGCGG-CGCUa-- -3'
miRNA:   3'- cUGCUGCUCGAU------------CGUGUCuGCGGcac -5'
25489 5' -55.9 NC_005336.1 + 40446 0.66 0.886647
Target:  5'- cGGCGGCGAGCcGGUGCugcagccGGAUGCCc-- -3'
miRNA:   3'- -CUGCUGCUCGaUCGUG-------UCUGCGGcac -5'
25489 5' -55.9 NC_005336.1 + 93783 0.66 0.883159
Target:  5'- -uCGGCGAGCUcaUGCAGGCcguagacauggggagGCCGUGg -3'
miRNA:   3'- cuGCUGCUCGAucGUGUCUG---------------CGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 41490 0.66 0.880327
Target:  5'- gGACG-CGAGCU--CGCGGACGgCGUc -3'
miRNA:   3'- -CUGCuGCUCGAucGUGUCUGCgGCAc -5'
25489 5' -55.9 NC_005336.1 + 132665 0.66 0.880327
Target:  5'- cGCGGCGAGUacgGGCGC--ACGCCGcUGc -3'
miRNA:   3'- cUGCUGCUCGa--UCGUGucUGCGGC-AC- -5'
25489 5' -55.9 NC_005336.1 + 99909 0.66 0.880327
Target:  5'- cACGuGCGAGCc-GgGCGGACGCCGc- -3'
miRNA:   3'- cUGC-UGCUCGauCgUGUCUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 53594 0.66 0.880327
Target:  5'- cGugGGCGGGCgc-CGC-GAgGCCGUGc -3'
miRNA:   3'- -CugCUGCUCGaucGUGuCUgCGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 14373 0.66 0.880327
Target:  5'- cGCGACGAGgUgcgggaagcGGCACuccacGACGCCGc- -3'
miRNA:   3'- cUGCUGCUCgA---------UCGUGu----CUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 12620 0.66 0.878898
Target:  5'- uGugGGCGGGCUGgaucgcgcgccgcguGCGCGGccucugcgcggcgcuGCGCCGg- -3'
miRNA:   3'- -CugCUGCUCGAU---------------CGUGUC---------------UGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 43615 0.66 0.873092
Target:  5'- cGCG-CGcGCUGGC---GACGCCGUGg -3'
miRNA:   3'- cUGCuGCuCGAUCGuguCUGCGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 3942 0.66 0.873092
Target:  5'- cGCGGCGcAGCgccgcGCGCAGcaGCGCCGc- -3'
miRNA:   3'- cUGCUGC-UCGau---CGUGUC--UGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 132962 0.66 0.873092
Target:  5'- cGCGGCugcuGCUGGaCGCGGGCGCgcgCGUGa -3'
miRNA:   3'- cUGCUGcu--CGAUC-GUGUCUGCG---GCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.