miRNA display CGI


Results 1 - 20 of 163 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25489 5' -55.9 NC_005336.1 + 99938 0.71 0.66147
Target:  5'- uGCGGCG-GCUGcGUGCggaGGGCGCCGUGc -3'
miRNA:   3'- cUGCUGCuCGAU-CGUG---UCUGCGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 110618 0.73 0.50799
Target:  5'- cGACGACGAGCUcggagGGCGCgagcaccauuuagGGGCGCCu-- -3'
miRNA:   3'- -CUGCUGCUCGA-----UCGUG-------------UCUGCGGcac -5'
25489 5' -55.9 NC_005336.1 + 60200 0.73 0.528706
Target:  5'- cGGCGACgGGGCUGGgGCuGGCGCUGg- -3'
miRNA:   3'- -CUGCUG-CUCGAUCgUGuCUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 6329 0.72 0.568964
Target:  5'- uGCGcACcAGCcGGCAgCAGGCGCCGUGg -3'
miRNA:   3'- cUGC-UGcUCGaUCGU-GUCUGCGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 19911 0.72 0.568964
Target:  5'- uGAUGAgGAugguaagugcGCUGGCGCAGGCGgUGUGg -3'
miRNA:   3'- -CUGCUgCU----------CGAUCGUGUCUGCgGCAC- -5'
25489 5' -55.9 NC_005336.1 + 83854 0.72 0.579156
Target:  5'- --aGAUGGGCuUGGCgGCAGGCGCCGg- -3'
miRNA:   3'- cugCUGCUCG-AUCG-UGUCUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 124061 0.71 0.609938
Target:  5'- uGGCGACGcGGCcuccCGCGGACGCCGUc -3'
miRNA:   3'- -CUGCUGC-UCGauc-GUGUCUGCGGCAc -5'
25489 5' -55.9 NC_005336.1 + 50778 0.71 0.620242
Target:  5'- uACGAaacCGAGCUcgugGGCACcgagauggugguGGGCGCCGUGu -3'
miRNA:   3'- cUGCU---GCUCGA----UCGUG------------UCUGCGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 93925 0.71 0.651177
Target:  5'- aGACGACGAaCUAGCcucCAGcGCGCCGg- -3'
miRNA:   3'- -CUGCUGCUcGAUCGu--GUC-UGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 100517 0.74 0.47048
Target:  5'- cGCGGaGAGCUucGGCAUccuGGACGCCGUGc -3'
miRNA:   3'- cUGCUgCUCGA--UCGUG---UCUGCGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 51837 0.74 0.47048
Target:  5'- cGACGACGA---GGCGCucGGCGCCGUGc -3'
miRNA:   3'- -CUGCUGCUcgaUCGUGu-CUGCGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 10281 0.74 0.47048
Target:  5'- cGGCGugcCGAGCcGGCGCAcGGCGUCGUGc -3'
miRNA:   3'- -CUGCu--GCUCGaUCGUGU-CUGCGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 101670 0.79 0.233994
Target:  5'- uGCGugGAGCaGGCGCAGGCGCUGc- -3'
miRNA:   3'- cUGCugCUCGaUCGUGUCUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 76958 0.79 0.264117
Target:  5'- cGCGGCGAGUcuucgUGGCGCGGugGCCGa- -3'
miRNA:   3'- cUGCUGCUCG-----AUCGUGUCugCGGCac -5'
25489 5' -55.9 NC_005336.1 + 78254 0.75 0.40695
Target:  5'- cGACGcCGAGCUgcagguccAGCGCGGGCGUCGa- -3'
miRNA:   3'- -CUGCuGCUCGA--------UCGUGUCUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 129295 0.75 0.424557
Target:  5'- uGCGGCGGcuGCUGGcCGCAGGCGCCucuGUGg -3'
miRNA:   3'- cUGCUGCU--CGAUC-GUGUCUGCGG---CAC- -5'
25489 5' -55.9 NC_005336.1 + 89036 0.74 0.44261
Target:  5'- --aGugGAGCgugAGCACcGGCGCCGUa -3'
miRNA:   3'- cugCugCUCGa--UCGUGuCUGCGGCAc -5'
25489 5' -55.9 NC_005336.1 + 120747 0.74 0.44261
Target:  5'- cGACGAgGAGgaAGCGCcgggcuguacGACGCCGUGa -3'
miRNA:   3'- -CUGCUgCUCgaUCGUGu---------CUGCGGCAC- -5'
25489 5' -55.9 NC_005336.1 + 42622 0.74 0.44261
Target:  5'- gGACGGCGuGCUcGCGCGcGGCGCCGc- -3'
miRNA:   3'- -CUGCUGCuCGAuCGUGU-CUGCGGCac -5'
25489 5' -55.9 NC_005336.1 + 30182 0.74 0.461089
Target:  5'- cGGCGGCGAGC-AGCGC--GCGCCuGUGg -3'
miRNA:   3'- -CUGCUGCUCGaUCGUGucUGCGG-CAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.