miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25490 3' -59.3 NC_005336.1 + 105670 0.66 0.746084
Target:  5'- gCGgCGGcgaucgGCGuGCUGCUGUGUUUCc-- -3'
miRNA:   3'- -GCgGCCa-----CGC-CGACGACGCGAAGaag -5'
25490 3' -59.3 NC_005336.1 + 94189 0.66 0.746084
Target:  5'- gCGCCGGUGCGGg-GUUGuCGCc----- -3'
miRNA:   3'- -GCGGCCACGCCgaCGAC-GCGaagaag -5'
25490 3' -59.3 NC_005336.1 + 65472 0.66 0.746084
Target:  5'- gCGCCGGUGCacaaaGGCgGUcGCGCUg---- -3'
miRNA:   3'- -GCGGCCACG-----CCGaCGaCGCGAagaag -5'
25490 3' -59.3 NC_005336.1 + 130252 0.66 0.745121
Target:  5'- aCGCCGcGcGCGGCUGCgccgccugcccggUGCaCUUCUcCg -3'
miRNA:   3'- -GCGGC-CaCGCCGACG-------------ACGcGAAGAaG- -5'
25490 3' -59.3 NC_005336.1 + 38621 0.66 0.743191
Target:  5'- aCGCUGGUGCGcgcgcacaccGCUacuuaccucgccucGCUGgGCUUCggcUCg -3'
miRNA:   3'- -GCGGCCACGC----------CGA--------------CGACgCGAAGa--AG- -5'
25490 3' -59.3 NC_005336.1 + 133123 0.66 0.736407
Target:  5'- aCGCCGcugGCGGCgcUGCUGgGCUcCggCg -3'
miRNA:   3'- -GCGGCca-CGCCG--ACGACgCGAaGaaG- -5'
25490 3' -59.3 NC_005336.1 + 69793 0.66 0.72664
Target:  5'- uGCCGGcGCucggacaacGuGCUGCUGCGCgcgCUg- -3'
miRNA:   3'- gCGGCCaCG---------C-CGACGACGCGaa-GAag -5'
25490 3' -59.3 NC_005336.1 + 82675 0.66 0.723694
Target:  5'- uCGgUGGUGUGGaagcucgagagcgcCUGCUGCGUgaaCUUCu -3'
miRNA:   3'- -GCgGCCACGCC--------------GACGACGCGaa-GAAG- -5'
25490 3' -59.3 NC_005336.1 + 135888 0.66 0.716792
Target:  5'- cCGCUGGacgcGCGGCUGCcGCuGCUgCUg- -3'
miRNA:   3'- -GCGGCCa---CGCCGACGaCG-CGAaGAag -5'
25490 3' -59.3 NC_005336.1 + 62469 0.66 0.706873
Target:  5'- gCGCCuGGUgcuGCGGCacUGCggcgUGCGCgcCUUCg -3'
miRNA:   3'- -GCGG-CCA---CGCCG--ACG----ACGCGaaGAAG- -5'
25490 3' -59.3 NC_005336.1 + 50767 0.66 0.706873
Target:  5'- gCGCCGGUGCucacGCUccaCUGCGCggCgUCg -3'
miRNA:   3'- -GCGGCCACGc---CGAc--GACGCGaaGaAG- -5'
25490 3' -59.3 NC_005336.1 + 98208 0.66 0.706873
Target:  5'- gCGCUGGcgGUGGacggGCUGgGCUUCgUCc -3'
miRNA:   3'- -GCGGCCa-CGCCga--CGACgCGAAGaAG- -5'
25490 3' -59.3 NC_005336.1 + 103431 0.66 0.696891
Target:  5'- gCGCCGGcgcaaGCGGCU-Cg--GCUUCUUCg -3'
miRNA:   3'- -GCGGCCa----CGCCGAcGacgCGAAGAAG- -5'
25490 3' -59.3 NC_005336.1 + 39590 0.66 0.696891
Target:  5'- aGCaCGGUGCGuGCgggGUUGCGCg----- -3'
miRNA:   3'- gCG-GCCACGC-CGa--CGACGCGaagaag -5'
25490 3' -59.3 NC_005336.1 + 92404 0.66 0.696891
Target:  5'- uCGCCGacgcccaGCGGCUGCgGCGggUCUg- -3'
miRNA:   3'- -GCGGCca-----CGCCGACGaCGCgaAGAag -5'
25490 3' -59.3 NC_005336.1 + 40458 0.66 0.696891
Target:  5'- aCGCCGGagGCGGCgcacGCaGCGagcaCUUCg -3'
miRNA:   3'- -GCGGCCa-CGCCGa---CGaCGCgaa-GAAG- -5'
25490 3' -59.3 NC_005336.1 + 94145 0.67 0.690876
Target:  5'- uGCCGGcggacgcggacagcGCaGCUGCUGCGCcUgUUCc -3'
miRNA:   3'- gCGGCCa-------------CGcCGACGACGCGaAgAAG- -5'
25490 3' -59.3 NC_005336.1 + 42146 0.67 0.686856
Target:  5'- gCGCCGcGgcgcGCGGCcucGCUGUGCcacggCUUCg -3'
miRNA:   3'- -GCGGC-Ca---CGCCGa--CGACGCGaa---GAAG- -5'
25490 3' -59.3 NC_005336.1 + 74584 0.67 0.686856
Target:  5'- uCGCCGcugGCGuGCgUGCUGCGCgaggUCg -3'
miRNA:   3'- -GCGGCca-CGC-CG-ACGACGCGaagaAG- -5'
25490 3' -59.3 NC_005336.1 + 131030 0.67 0.686856
Target:  5'- aCGCCGGaGC-GCUGCUGCGgcUCg-- -3'
miRNA:   3'- -GCGGCCaCGcCGACGACGCgaAGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.