miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25490 3' -59.3 NC_005336.1 + 132702 1.1 0.000974
Target:  5'- cCGCCGGUGCGGCUGCUGCGCUUCUUCg -3'
miRNA:   3'- -GCGGCCACGCCGACGACGCGAAGAAG- -5'
25490 3' -59.3 NC_005336.1 + 93620 0.81 0.099315
Target:  5'- gCGCUGGcGCGGCUGCgucgGCGCUUCg-- -3'
miRNA:   3'- -GCGGCCaCGCCGACGa---CGCGAAGaag -5'
25490 3' -59.3 NC_005336.1 + 133355 0.8 0.125562
Target:  5'- uCGCCGGagGCGGCgGCgGCGCUgggCUUCg -3'
miRNA:   3'- -GCGGCCa-CGCCGaCGaCGCGAa--GAAG- -5'
25490 3' -59.3 NC_005336.1 + 125072 0.75 0.246626
Target:  5'- uCGCCGGUGUGGCUgGCgGCag-UCUUCg -3'
miRNA:   3'- -GCGGCCACGCCGA-CGaCGcgaAGAAG- -5'
25490 3' -59.3 NC_005336.1 + 122759 0.73 0.333538
Target:  5'- uCGCCGGccUGCGGCUGUucgcgggaugccUGCGCUcCgUCg -3'
miRNA:   3'- -GCGGCC--ACGCCGACG------------ACGCGAaGaAG- -5'
25490 3' -59.3 NC_005336.1 + 136252 0.73 0.356536
Target:  5'- gCGCUGGUgGCGGCggGCUucGCGCUcggcgcgcUCUUCc -3'
miRNA:   3'- -GCGGCCA-CGCCGa-CGA--CGCGA--------AGAAG- -5'
25490 3' -59.3 NC_005336.1 + 136252 0.73 0.356536
Target:  5'- gCGCUGGUgGCGGCggGCUucGCGCUcggcgcgcUCUUCc -3'
miRNA:   3'- -GCGGCCA-CGCCGa-CGA--CGCGA--------AGAAG- -5'
25490 3' -59.3 NC_005336.1 + 42298 0.73 0.358896
Target:  5'- aCGCCGGcaagucgUGCGGCUGCgccucgaggcugcgGCGCUgg-UCg -3'
miRNA:   3'- -GCGGCC-------ACGCCGACGa-------------CGCGAagaAG- -5'
25490 3' -59.3 NC_005336.1 + 77961 0.72 0.364445
Target:  5'- cCGCCGGgcUGgGGCgagggGgUGCGCUUCgagUCg -3'
miRNA:   3'- -GCGGCC--ACgCCGa----CgACGCGAAGa--AG- -5'
25490 3' -59.3 NC_005336.1 + 80411 0.72 0.364445
Target:  5'- uGCCGaacucGCGGCUGCUGUGgUUCaUCg -3'
miRNA:   3'- gCGGCca---CGCCGACGACGCgAAGaAG- -5'
25490 3' -59.3 NC_005336.1 + 38292 0.72 0.397277
Target:  5'- uCGCCG--GCGGCaacgcGCUGCGCgUCUUCu -3'
miRNA:   3'- -GCGGCcaCGCCGa----CGACGCGaAGAAG- -5'
25490 3' -59.3 NC_005336.1 + 40610 0.72 0.405777
Target:  5'- gCGCCGucguUGUGGCUGCggcgGCGCaUCUUg -3'
miRNA:   3'- -GCGGCc---ACGCCGACGa---CGCGaAGAAg -5'
25490 3' -59.3 NC_005336.1 + 50971 0.71 0.431949
Target:  5'- gCGCCGGcGCGGCgGCcgGCGCaUCa-- -3'
miRNA:   3'- -GCGGCCaCGCCGaCGa-CGCGaAGaag -5'
25490 3' -59.3 NC_005336.1 + 62602 0.71 0.440891
Target:  5'- uCGCUGGacccGCGGCUGCUGgGCgcCUa- -3'
miRNA:   3'- -GCGGCCa---CGCCGACGACgCGaaGAag -5'
25490 3' -59.3 NC_005336.1 + 114328 0.7 0.456328
Target:  5'- uCGCUGGcgGCGGCgccggacaacccgcUGCUGCGCgacgaggcCUUCg -3'
miRNA:   3'- -GCGGCCa-CGCCG--------------ACGACGCGaa------GAAG- -5'
25490 3' -59.3 NC_005336.1 + 136634 0.7 0.459082
Target:  5'- aGCUGGaGCGGCUGCgccGCGCggagCUg- -3'
miRNA:   3'- gCGGCCaCGCCGACGa--CGCGaa--GAag -5'
25490 3' -59.3 NC_005336.1 + 99765 0.7 0.459082
Target:  5'- aGgCGcUGCGGCUGCuggUGCGCcgCUUCg -3'
miRNA:   3'- gCgGCcACGCCGACG---ACGCGaaGAAG- -5'
25490 3' -59.3 NC_005336.1 + 136634 0.7 0.459082
Target:  5'- aGCUGGaGCGGCUGCgccGCGCggagCUg- -3'
miRNA:   3'- gCGGCCaCGCCGACGa--CGCGaa--GAag -5'
25490 3' -59.3 NC_005336.1 + 54545 0.69 0.519784
Target:  5'- aGgUGGUGCGGCUGCucaaccaccucugcgUGCGCUgcgggCUg- -3'
miRNA:   3'- gCgGCCACGCCGACG---------------ACGCGAa----GAag -5'
25490 3' -59.3 NC_005336.1 + 96905 0.69 0.535465
Target:  5'- uCGCCGGacgcggGCGGCcGCUGUGUcUgUUCc -3'
miRNA:   3'- -GCGGCCa-----CGCCGaCGACGCGaAgAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.