miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25490 5' -48.3 NC_005336.1 + 18247 0.66 0.99917
Target:  5'- ----cGGAAGCGU---GCCGCGUGaUCg -3'
miRNA:   3'- aguuuCCUUUGCGaguUGGCGUAC-AG- -5'
25490 5' -48.3 NC_005336.1 + 94225 0.66 0.99917
Target:  5'- aCAGAGGAccUGCUCGAgCGCGc--- -3'
miRNA:   3'- aGUUUCCUuuGCGAGUUgGCGUacag -5'
25490 5' -48.3 NC_005336.1 + 136484 0.66 0.99917
Target:  5'- gCAAGGGc-GCGCUgCuGCUGCAcGUCg -3'
miRNA:   3'- aGUUUCCuuUGCGA-GuUGGCGUaCAG- -5'
25490 5' -48.3 NC_005336.1 + 52689 0.66 0.99917
Target:  5'- cUCAuuucGGAcaucCGCUcCAACCGCGUGg- -3'
miRNA:   3'- -AGUuu--CCUuu--GCGA-GUUGGCGUACag -5'
25490 5' -48.3 NC_005336.1 + 136484 0.66 0.99917
Target:  5'- gCAAGGGc-GCGCUgCuGCUGCAcGUCg -3'
miRNA:   3'- aGUUUCCuuUGCGA-GuUGGCGUaCAG- -5'
25490 5' -48.3 NC_005336.1 + 81828 0.66 0.99917
Target:  5'- gCGAAGGcgcCGCgCcGCCGCAguUGUCg -3'
miRNA:   3'- aGUUUCCuuuGCGaGuUGGCGU--ACAG- -5'
25490 5' -48.3 NC_005336.1 + 32580 0.66 0.99917
Target:  5'- gCAuguuGGAAACGCagua-CGCGUGUCu -3'
miRNA:   3'- aGUuu--CCUUUGCGaguugGCGUACAG- -5'
25490 5' -48.3 NC_005336.1 + 70597 0.66 0.999152
Target:  5'- cUCGAAGGcc-CGCUCGcgcgcgaACUGCccGUCg -3'
miRNA:   3'- -AGUUUCCuuuGCGAGU-------UGGCGuaCAG- -5'
25490 5' -48.3 NC_005336.1 + 138809 0.66 0.998978
Target:  5'- cCAGAGGAccucuCGCgCAACCGUcgGa- -3'
miRNA:   3'- aGUUUCCUuu---GCGaGUUGGCGuaCag -5'
25490 5' -48.3 NC_005336.1 + 48207 0.66 0.998978
Target:  5'- uUCGAGccgcgcguGGAAACGCUCGGCguguuggcgcugUGCGUGg- -3'
miRNA:   3'- -AGUUU--------CCUUUGCGAGUUG------------GCGUACag -5'
25490 5' -48.3 NC_005336.1 + 138809 0.66 0.998978
Target:  5'- cCAGAGGAccucuCGCgCAACCGUcgGa- -3'
miRNA:   3'- aGUUUCCUuu---GCGaGUUGGCGuaCag -5'
25490 5' -48.3 NC_005336.1 + 124150 0.66 0.998978
Target:  5'- gCGcAGcGAGCaGCcgCGGCCGCGUGUCu -3'
miRNA:   3'- aGUuUCcUUUG-CGa-GUUGGCGUACAG- -5'
25490 5' -48.3 NC_005336.1 + 79763 0.66 0.998978
Target:  5'- cCGAAGGAGAUGCagcGCCGCGc--- -3'
miRNA:   3'- aGUUUCCUUUGCGaguUGGCGUacag -5'
25490 5' -48.3 NC_005336.1 + 26849 0.66 0.998978
Target:  5'- aCuGAGGuuGCGC--AGCCGCAUGg- -3'
miRNA:   3'- aGuUUCCuuUGCGagUUGGCGUACag -5'
25490 5' -48.3 NC_005336.1 + 125813 0.66 0.998978
Target:  5'- -gGAGGGGAAC-CUCGAUCGCGcGcUCu -3'
miRNA:   3'- agUUUCCUUUGcGAGUUGGCGUaC-AG- -5'
25490 5' -48.3 NC_005336.1 + 118638 0.66 0.99875
Target:  5'- --cGAGGuuGCGgUCGAUgGCGUGUa -3'
miRNA:   3'- aguUUCCuuUGCgAGUUGgCGUACAg -5'
25490 5' -48.3 NC_005336.1 + 36211 0.66 0.99875
Target:  5'- -gAGAGGucGCGCUCgAGCCGCu---- -3'
miRNA:   3'- agUUUCCuuUGCGAG-UUGGCGuacag -5'
25490 5' -48.3 NC_005336.1 + 97269 0.66 0.99875
Target:  5'- gCAAAGGuGACGCUgCGGCCcGCAc--- -3'
miRNA:   3'- aGUUUCCuUUGCGA-GUUGG-CGUacag -5'
25490 5' -48.3 NC_005336.1 + 66004 0.66 0.998479
Target:  5'- ----uGGAGGCGCUgcGCgGCGUGUg -3'
miRNA:   3'- aguuuCCUUUGCGAguUGgCGUACAg -5'
25490 5' -48.3 NC_005336.1 + 53728 0.66 0.998479
Target:  5'- -uGGAGGu--CGC-CGACCGCucaGUGUCc -3'
miRNA:   3'- agUUUCCuuuGCGaGUUGGCG---UACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.