miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25490 5' -48.3 NC_005336.1 + 3669 0.71 0.965731
Target:  5'- -gGAGGGAGGgGuCUCGACUGCGggcgGUCc -3'
miRNA:   3'- agUUUCCUUUgC-GAGUUGGCGUa---CAG- -5'
25490 5' -48.3 NC_005336.1 + 3669 0.71 0.965731
Target:  5'- -gGAGGGAGGgGuCUCGACUGCGggcgGUCc -3'
miRNA:   3'- agUUUCCUUUgC-GAGUUGGCGUa---CAG- -5'
25490 5' -48.3 NC_005336.1 + 5854 0.69 0.982266
Target:  5'- cUCAGccAGcGAGACGCgCAGCCGCAUc-- -3'
miRNA:   3'- -AGUU--UC-CUUUGCGaGUUGGCGUAcag -5'
25490 5' -48.3 NC_005336.1 + 6265 0.72 0.930012
Target:  5'- -gGAAGGucGCGC-CGGCCGCG-GUCa -3'
miRNA:   3'- agUUUCCuuUGCGaGUUGGCGUaCAG- -5'
25490 5' -48.3 NC_005336.1 + 10348 0.72 0.940534
Target:  5'- gCAGAGGugcacGGGCGUgCAGCCGCAgcagGUCu -3'
miRNA:   3'- aGUUUCC-----UUUGCGaGUUGGCGUa---CAG- -5'
25490 5' -48.3 NC_005336.1 + 15298 0.67 0.996273
Target:  5'- cCGAGGGucAACGUgu-GCCGCAggcUGUCu -3'
miRNA:   3'- aGUUUCCu-UUGCGaguUGGCGU---ACAG- -5'
25490 5' -48.3 NC_005336.1 + 18247 0.66 0.99917
Target:  5'- ----cGGAAGCGU---GCCGCGUGaUCg -3'
miRNA:   3'- aguuuCCUUUGCGaguUGGCGUAC-AG- -5'
25490 5' -48.3 NC_005336.1 + 18657 0.71 0.969048
Target:  5'- gCAAAGGGGucuGCGC-CAACCGCgagcaGUGUg -3'
miRNA:   3'- aGUUUCCUU---UGCGaGUUGGCG-----UACAg -5'
25490 5' -48.3 NC_005336.1 + 20007 0.68 0.990708
Target:  5'- --uGAGGugcGAgGCUCAAUCGC-UGUCg -3'
miRNA:   3'- aguUUCCu--UUgCGAGUUGGCGuACAG- -5'
25490 5' -48.3 NC_005336.1 + 24776 0.72 0.945389
Target:  5'- aUCGgguGGGGAGACGCUCGcccuGCCGgAaGUCc -3'
miRNA:   3'- -AGU---UUCCUUUGCGAGU----UGGCgUaCAG- -5'
25490 5' -48.3 NC_005336.1 + 26849 0.66 0.998978
Target:  5'- aCuGAGGuuGCGC--AGCCGCAUGg- -3'
miRNA:   3'- aGuUUCCuuUGCGagUUGGCGUACag -5'
25490 5' -48.3 NC_005336.1 + 28958 0.69 0.984298
Target:  5'- gUC-AGGGAAGCGCUgcgcagcgCAgaccuguccggcGCCGUGUGUCg -3'
miRNA:   3'- -AGuUUCCUUUGCGA--------GU------------UGGCGUACAG- -5'
25490 5' -48.3 NC_005336.1 + 29655 0.68 0.993023
Target:  5'- gUCAacGAGGAGugGCUCu-CCGCGc--- -3'
miRNA:   3'- -AGU--UUCCUUugCGAGuuGGCGUacag -5'
25490 5' -48.3 NC_005336.1 + 32580 0.66 0.99917
Target:  5'- gCAuguuGGAAACGCagua-CGCGUGUCu -3'
miRNA:   3'- aGUuu--CCUUUGCGaguugGCGUACAG- -5'
25490 5' -48.3 NC_005336.1 + 33206 0.74 0.884647
Target:  5'- aCGAGcuuGGAcACGUUCAugCGCGUGUUg -3'
miRNA:   3'- aGUUU---CCUuUGCGAGUugGCGUACAG- -5'
25490 5' -48.3 NC_005336.1 + 36211 0.66 0.99875
Target:  5'- -gAGAGGucGCGCUCgAGCCGCu---- -3'
miRNA:   3'- agUUUCCuuUGCGAG-UUGGCGuacag -5'
25490 5' -48.3 NC_005336.1 + 39407 0.67 0.996852
Target:  5'- gCAAGGGccGCGUg-GGCCGCGUGg- -3'
miRNA:   3'- aGUUUCCuuUGCGagUUGGCGUACag -5'
25490 5' -48.3 NC_005336.1 + 41154 0.67 0.997536
Target:  5'- gCGcGGGAAaaugaccuccggcguGCGCggCAGCCGCccgaAUGUCg -3'
miRNA:   3'- aGUuUCCUU---------------UGCGa-GUUGGCG----UACAG- -5'
25490 5' -48.3 NC_005336.1 + 45772 0.68 0.990708
Target:  5'- gCGGAGG-AGCGC---ACCGgCAUGUCg -3'
miRNA:   3'- aGUUUCCuUUGCGaguUGGC-GUACAG- -5'
25490 5' -48.3 NC_005336.1 + 46643 0.68 0.993023
Target:  5'- aCGAcGGcGAUG-UCAGCCGCGUGUUc -3'
miRNA:   3'- aGUUuCCuUUGCgAGUUGGCGUACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.