miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25491 3' -54.4 NC_005336.1 + 128743 0.66 0.942588
Target:  5'- gGACAUGU-CCGugcgcaaguuCGUGguGCC-CGGGCGGg -3'
miRNA:   3'- -CUGUACAuGGU----------GUAC--CGGuGUCCGCC- -5'
25491 3' -54.4 NC_005336.1 + 19296 0.66 0.942588
Target:  5'- -cCAgcgGCCGCGUGGUgUACAGcGCGGa -3'
miRNA:   3'- cuGUacaUGGUGUACCG-GUGUC-CGCC- -5'
25491 3' -54.4 NC_005336.1 + 38454 0.66 0.942588
Target:  5'- gGAUcgGccGCCGCcccGUGGUgcuCACGGGCGGc -3'
miRNA:   3'- -CUGuaCa-UGGUG---UACCG---GUGUCCGCC- -5'
25491 3' -54.4 NC_005336.1 + 110201 0.66 0.942588
Target:  5'- uGCGUG-AgCGCG-GGCCacuGCAGGUGGa -3'
miRNA:   3'- cUGUACaUgGUGUaCCGG---UGUCCGCC- -5'
25491 3' -54.4 NC_005336.1 + 15734 0.66 0.942121
Target:  5'- cGACGgcguCCGCGggaGGCCGCgucgccaGGGCGGc -3'
miRNA:   3'- -CUGUacauGGUGUa--CCGGUG-------UCCGCC- -5'
25491 3' -54.4 NC_005336.1 + 30170 0.66 0.937815
Target:  5'- cGCAagGUGCUcgaggACGUGGCCGCGcacGCGGu -3'
miRNA:   3'- cUGUa-CAUGG-----UGUACCGGUGUc--CGCC- -5'
25491 3' -54.4 NC_005336.1 + 127025 0.66 0.937815
Target:  5'- gGACGUGaACUACGcgGGCC-CGcGCGGg -3'
miRNA:   3'- -CUGUACaUGGUGUa-CCGGuGUcCGCC- -5'
25491 3' -54.4 NC_005336.1 + 79725 0.66 0.932796
Target:  5'- --gGUGU-CCGCGgcggaguucacGGCCACGuGGCGGa -3'
miRNA:   3'- cugUACAuGGUGUa----------CCGGUGU-CCGCC- -5'
25491 3' -54.4 NC_005336.1 + 50120 0.66 0.932796
Target:  5'- -----aUGCC-CAUGGCCACcGGCGu -3'
miRNA:   3'- cuguacAUGGuGUACCGGUGuCCGCc -5'
25491 3' -54.4 NC_005336.1 + 104851 0.66 0.932796
Target:  5'- gGACAag-GCCACGgugcgcuGCCGCGGGCGc -3'
miRNA:   3'- -CUGUacaUGGUGUac-----CGGUGUCCGCc -5'
25491 3' -54.4 NC_005336.1 + 103680 0.66 0.927529
Target:  5'- cGCAg--GCCACG-GGCCGCcgccGGUGGg -3'
miRNA:   3'- cUGUacaUGGUGUaCCGGUGu---CCGCC- -5'
25491 3' -54.4 NC_005336.1 + 20260 0.66 0.927529
Target:  5'- uGGCGUG-AUCGCcagGGgCGCAGGCuGGg -3'
miRNA:   3'- -CUGUACaUGGUGua-CCgGUGUCCG-CC- -5'
25491 3' -54.4 NC_005336.1 + 132647 0.66 0.927529
Target:  5'- cGAgAUcUACCugcgauACGUGGCUucGCAGGUGGa -3'
miRNA:   3'- -CUgUAcAUGG------UGUACCGG--UGUCCGCC- -5'
25491 3' -54.4 NC_005336.1 + 40576 0.66 0.922015
Target:  5'- gGGCGUGcgcgucUugCGCAUGaGCCGCgcGGGCGc -3'
miRNA:   3'- -CUGUAC------AugGUGUAC-CGGUG--UCCGCc -5'
25491 3' -54.4 NC_005336.1 + 125397 0.67 0.916252
Target:  5'- ----cGUGCCGCGgaucGGCCGC-GGCGu -3'
miRNA:   3'- cuguaCAUGGUGUa---CCGGUGuCCGCc -5'
25491 3' -54.4 NC_005336.1 + 136520 0.67 0.916252
Target:  5'- -cCGUGUACgACGUGcGCgGCcuGCGGg -3'
miRNA:   3'- cuGUACAUGgUGUAC-CGgUGucCGCC- -5'
25491 3' -54.4 NC_005336.1 + 127833 0.67 0.916252
Target:  5'- cGGCcUGcgcgcgGCUGC-UGGCCGCGGGCGcGg -3'
miRNA:   3'- -CUGuACa-----UGGUGuACCGGUGUCCGC-C- -5'
25491 3' -54.4 NC_005336.1 + 115414 0.67 0.916252
Target:  5'- aGCAUGgACCACGUcgaggcGGUCGCcGGCGa -3'
miRNA:   3'- cUGUACaUGGUGUA------CCGGUGuCCGCc -5'
25491 3' -54.4 NC_005336.1 + 136520 0.67 0.916252
Target:  5'- -cCGUGUACgACGUGcGCgGCcuGCGGg -3'
miRNA:   3'- cuGUACAUGgUGUAC-CGgUGucCGCC- -5'
25491 3' -54.4 NC_005336.1 + 126537 0.67 0.910242
Target:  5'- cACAUcccccgGCCGCAUGGUCACu-GCGGu -3'
miRNA:   3'- cUGUAca----UGGUGUACCGGUGucCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.