miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25491 5' -55.7 NC_005336.1 + 45318 0.66 0.882551
Target:  5'- cUCgGCgUCGGCCGUcucgGCGgGGUCGAc -3'
miRNA:   3'- aAGgCGaAGCUGGCGa---UGCaCCAGUU- -5'
25491 5' -55.7 NC_005336.1 + 9501 0.66 0.87527
Target:  5'- -gCUGUUUCG-CCGacggGCGUGGUCGc -3'
miRNA:   3'- aaGGCGAAGCuGGCga--UGCACCAGUu -5'
25491 5' -55.7 NC_005336.1 + 96978 0.66 0.867761
Target:  5'- gUUCCGCUUCGuGCUGCc-CGUGGg--- -3'
miRNA:   3'- -AAGGCGAAGC-UGGCGauGCACCaguu -5'
25491 5' -55.7 NC_005336.1 + 42556 0.66 0.86003
Target:  5'- -aCCGCgcggCGGCCG-UGCGUGG-CGAu -3'
miRNA:   3'- aaGGCGaa--GCUGGCgAUGCACCaGUU- -5'
25491 5' -55.7 NC_005336.1 + 97365 0.66 0.858458
Target:  5'- -gCUGCUgcgcucgggcgagcUCGACCGCgccaugguggccauCGUGGUCAGu -3'
miRNA:   3'- aaGGCGA--------------AGCUGGCGau------------GCACCAGUU- -5'
25491 5' -55.7 NC_005336.1 + 53278 0.66 0.852083
Target:  5'- uUUCCGCacaaGGCCGCgcgacGCGUGGUg-- -3'
miRNA:   3'- -AAGGCGaag-CUGGCGa----UGCACCAguu -5'
25491 5' -55.7 NC_005336.1 + 30342 0.67 0.827019
Target:  5'- -aCCGCUUCGACaUGCUGCGcgcGGaCAc -3'
miRNA:   3'- aaGGCGAAGCUG-GCGAUGCa--CCaGUu -5'
25491 5' -55.7 NC_005336.1 + 120134 0.67 0.818282
Target:  5'- -cCCGCggCGGCUGUacgcgcGCGUGGUCGc -3'
miRNA:   3'- aaGGCGaaGCUGGCGa-----UGCACCAGUu -5'
25491 5' -55.7 NC_005336.1 + 101414 0.68 0.791973
Target:  5'- cUUCGCggcgguggcggacgCGGCCGCgcGCGUGGUCGc -3'
miRNA:   3'- aAGGCGaa------------GCUGGCGa-UGCACCAGUu -5'
25491 5' -55.7 NC_005336.1 + 103537 0.68 0.791042
Target:  5'- aUCCGCc-CG-CUGCU-CGUGGUCGAg -3'
miRNA:   3'- aAGGCGaaGCuGGCGAuGCACCAGUU- -5'
25491 5' -55.7 NC_005336.1 + 72401 0.68 0.752667
Target:  5'- -gCCGCUUCcugGACaCGC-GCGUGGUCu- -3'
miRNA:   3'- aaGGCGAAG---CUG-GCGaUGCACCAGuu -5'
25491 5' -55.7 NC_005336.1 + 24378 0.69 0.722683
Target:  5'- -gUCGCcggCGACCGCcucgACGUGGUCc- -3'
miRNA:   3'- aaGGCGaa-GCUGGCGa---UGCACCAGuu -5'
25491 5' -55.7 NC_005336.1 + 36798 0.69 0.702269
Target:  5'- -gCCGCUgagcagCG-CCGCgaagGCGUGGUUAAa -3'
miRNA:   3'- aaGGCGAa-----GCuGGCGa---UGCACCAGUU- -5'
25491 5' -55.7 NC_005336.1 + 129641 0.7 0.691965
Target:  5'- aUCCGCgggCGcggacgugaacGCCGCcaGCGUGGUCGAc -3'
miRNA:   3'- aAGGCGaa-GC-----------UGGCGa-UGCACCAGUU- -5'
25491 5' -55.7 NC_005336.1 + 63400 0.7 0.670166
Target:  5'- -aCCGCcUCGucgagcaGCCGCgucUGCGUGGUCAu -3'
miRNA:   3'- aaGGCGaAGC-------UGGCG---AUGCACCAGUu -5'
25491 5' -55.7 NC_005336.1 + 50035 0.7 0.639846
Target:  5'- -gCCGCagCGGCCGgUACGUGGgCGAc -3'
miRNA:   3'- aaGGCGaaGCUGGCgAUGCACCaGUU- -5'
25491 5' -55.7 NC_005336.1 + 101714 0.71 0.587557
Target:  5'- cUCCGCgcggcucgCGGCCGCggACGUGGcCAc -3'
miRNA:   3'- aAGGCGaa------GCUGGCGa-UGCACCaGUu -5'
25491 5' -55.7 NC_005336.1 + 22150 0.72 0.566823
Target:  5'- cUUCCGCgaCGACCuCUuccGCGUGGUCGc -3'
miRNA:   3'- -AAGGCGaaGCUGGcGA---UGCACCAGUu -5'
25491 5' -55.7 NC_005336.1 + 107552 0.76 0.34446
Target:  5'- cUUCCGCgcggugCGgaaccACCGCUugGUGGUCGAg -3'
miRNA:   3'- -AAGGCGaa----GC-----UGGCGAugCACCAGUU- -5'
25491 5' -55.7 NC_005336.1 + 132868 1.04 0.005093
Target:  5'- gUUCCGCUUCGACCGCUACGUGGUCAAg -3'
miRNA:   3'- -AAGGCGAAGCUGGCGAUGCACCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.