miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25492 3' -57.3 NC_005336.1 + 7534 0.66 0.850934
Target:  5'- gUUGCGAGCacgcgcuccaccaguUCgCCGGGCa--GCGAGCa -3'
miRNA:   3'- aGAUGCUCG---------------AG-GGCCCGacgUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 112844 0.66 0.847758
Target:  5'- --cGCGAGaUCCCGGuCUGCcuggacccgGCGGACg -3'
miRNA:   3'- agaUGCUCgAGGGCCcGACG---------UGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 134052 0.66 0.847758
Target:  5'- aCUGCGAGCUggUGGuGCUGaaccgcugccaCGCGGACg -3'
miRNA:   3'- aGAUGCUCGAggGCC-CGAC-----------GUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 124370 0.66 0.847758
Target:  5'- aCUugGuGgaCgCGcGGCUGCGCGAGa -3'
miRNA:   3'- aGAugCuCgaGgGC-CCGACGUGCUUg -5'
25492 3' -57.3 NC_005336.1 + 71151 0.66 0.846159
Target:  5'- -gUACGGGCggugucgcagcgCCgcgaCGGGCaGCGCGGGCg -3'
miRNA:   3'- agAUGCUCGa-----------GG----GCCCGaCGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 135977 0.66 0.839683
Target:  5'- gCUGCGcGCgg-CGGGCgcGCGCGGGCa -3'
miRNA:   3'- aGAUGCuCGaggGCCCGa-CGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 19594 0.66 0.839683
Target:  5'- cUCUuCGAGCaggUCCuCGGGCguuacgUGCuGCGGGCg -3'
miRNA:   3'- -AGAuGCUCG---AGG-GCCCG------ACG-UGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 39166 0.66 0.839683
Target:  5'- aUCgagGCcAGacacCCCGGGCUGCugGuGCg -3'
miRNA:   3'- -AGa--UGcUCga--GGGCCCGACGugCuUG- -5'
25492 3' -57.3 NC_005336.1 + 135977 0.66 0.839683
Target:  5'- gCUGCGcGCgg-CGGGCgcGCGCGGGCa -3'
miRNA:   3'- aGAUGCuCGaggGCCCGa-CGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 66528 0.66 0.839683
Target:  5'- gCUGCGGGUg--CGGGC-GCGCGGAg -3'
miRNA:   3'- aGAUGCUCGaggGCCCGaCGUGCUUg -5'
25492 3' -57.3 NC_005336.1 + 131543 0.66 0.831419
Target:  5'- --cGCGAGCUCauccggCUGGGCUGCAg---- -3'
miRNA:   3'- agaUGCUCGAG------GGCCCGACGUgcuug -5'
25492 3' -57.3 NC_005336.1 + 99076 0.66 0.831419
Target:  5'- aCUGCGugguGCUguaCCCGGGCUuCACGucCu -3'
miRNA:   3'- aGAUGCu---CGA---GGGCCCGAcGUGCuuG- -5'
25492 3' -57.3 NC_005336.1 + 36078 0.66 0.831419
Target:  5'- --cGCGcGCUCCuCGGGCgGCAgCGuGCg -3'
miRNA:   3'- agaUGCuCGAGG-GCCCGaCGU-GCuUG- -5'
25492 3' -57.3 NC_005336.1 + 13612 0.66 0.822973
Target:  5'- cUCgccguCGuGCUCCaUGGGCUGCgGCGGcgGCa -3'
miRNA:   3'- -AGau---GCuCGAGG-GCCCGACG-UGCU--UG- -5'
25492 3' -57.3 NC_005336.1 + 107009 0.66 0.822973
Target:  5'- --gGCGGcGCUCauGGGCUuCACGGGCa -3'
miRNA:   3'- agaUGCU-CGAGggCCCGAcGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 134313 0.66 0.822973
Target:  5'- uUCUGauaaAGCUCCCaccuGGUUGCuACGGACg -3'
miRNA:   3'- -AGAUgc--UCGAGGGc---CCGACG-UGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 122787 0.66 0.822973
Target:  5'- cCUGC--GCUCCgucgugGGGCgGCGCGAGCu -3'
miRNA:   3'- aGAUGcuCGAGGg-----CCCGaCGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 130266 0.66 0.822973
Target:  5'- ---cCGAGC-CgCGGGCUGUggcagagucgcuGCGAGCg -3'
miRNA:   3'- agauGCUCGaGgGCCCGACG------------UGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 14775 0.66 0.822973
Target:  5'- --gGCG-GCUCCgCGGGCagauacaCGCGAACa -3'
miRNA:   3'- agaUGCuCGAGG-GCCCGac-----GUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 134137 0.66 0.822973
Target:  5'- --gGCGGcGCUCCCGgccgcggacaGGCUcgccgucgcGCGCGAGCu -3'
miRNA:   3'- agaUGCU-CGAGGGC----------CCGA---------CGUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.