miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25492 3' -57.3 NC_005336.1 + 133445 1.1 0.001687
Target:  5'- aUCUACGAGCUCCCGGGCUGCACGAACu -3'
miRNA:   3'- -AGAUGCUCGAGGGCCCGACGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 100242 0.84 0.0988
Target:  5'- --cGCGAGgUCgCUGGGCUGCACGAGCa -3'
miRNA:   3'- agaUGCUCgAG-GGCCCGACGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 60159 0.78 0.229504
Target:  5'- ----gGAGCUCUCGGGCUucucGCGCGAGCu -3'
miRNA:   3'- agaugCUCGAGGGCCCGA----CGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 130887 0.78 0.246806
Target:  5'- gCUACGAccGCUUCUGGG-UGCGCGAGCg -3'
miRNA:   3'- aGAUGCU--CGAGGGCCCgACGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 110994 0.76 0.291371
Target:  5'- gCUGCGcGCUCUCGGGC-GCGCGGcACa -3'
miRNA:   3'- aGAUGCuCGAGGGCCCGaCGUGCU-UG- -5'
25492 3' -57.3 NC_005336.1 + 130647 0.76 0.312317
Target:  5'- aCUGCGuGCUCCCGcGCgaggUGCugGAGCg -3'
miRNA:   3'- aGAUGCuCGAGGGCcCG----ACGugCUUG- -5'
25492 3' -57.3 NC_005336.1 + 40561 0.76 0.319549
Target:  5'- --cACGAGCacguUCCCGGGCgUGCGCGucuuGCg -3'
miRNA:   3'- agaUGCUCG----AGGGCCCG-ACGUGCu---UG- -5'
25492 3' -57.3 NC_005336.1 + 130204 0.75 0.341225
Target:  5'- cCUGCGAcauggcgGCcuUCCgCGGGCUGCGCGAGa -3'
miRNA:   3'- aGAUGCU-------CG--AGG-GCCCGACGUGCUUg -5'
25492 3' -57.3 NC_005336.1 + 24004 0.75 0.349721
Target:  5'- cUCUACGAGgaCCCGGuGCc-CGCGAACa -3'
miRNA:   3'- -AGAUGCUCgaGGGCC-CGacGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 64080 0.75 0.365551
Target:  5'- gUCU-CGcuGCUCgCGGaGCUGCGCGAGCg -3'
miRNA:   3'- -AGAuGCu-CGAGgGCC-CGACGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 79612 0.74 0.376922
Target:  5'- --gGCGAGCUCCCGGuggagaggucguugaGCUcGCGCGAGa -3'
miRNA:   3'- agaUGCUCGAGGGCC---------------CGA-CGUGCUUg -5'
25492 3' -57.3 NC_005336.1 + 44308 0.74 0.390206
Target:  5'- aCUGCGcAGCUgCUGGGCUacgGCGCGAguGCg -3'
miRNA:   3'- aGAUGC-UCGAgGGCCCGA---CGUGCU--UG- -5'
25492 3' -57.3 NC_005336.1 + 110061 0.74 0.407236
Target:  5'- cUCUGCGuGCgCCCGGuCgGCGCGGACa -3'
miRNA:   3'- -AGAUGCuCGaGGGCCcGaCGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 30409 0.73 0.415924
Target:  5'- gCUGCGcGC-CgCGGaGCUGCGCGAGCu -3'
miRNA:   3'- aGAUGCuCGaGgGCC-CGACGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 122730 0.73 0.415924
Target:  5'- aCUGCGAGCccggcgUCCUGaGGCUGCGCucGCc -3'
miRNA:   3'- aGAUGCUCG------AGGGC-CCGACGUGcuUG- -5'
25492 3' -57.3 NC_005336.1 + 130045 0.73 0.451776
Target:  5'- aCUGCGAGUUCUgGGGCggcgucUGCGUGGACg -3'
miRNA:   3'- aGAUGCUCGAGGgCCCG------ACGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 104692 0.72 0.469388
Target:  5'- gCUACGcGCUcucgcacCCCGaGGCUGCuGCGGACg -3'
miRNA:   3'- aGAUGCuCGA-------GGGC-CCGACG-UGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 5693 0.72 0.470325
Target:  5'- cUCUGCGAGCgCCgCGgaGGCcaGCGCGAGCg -3'
miRNA:   3'- -AGAUGCUCGaGG-GC--CCGa-CGUGCUUG- -5'
25492 3' -57.3 NC_005336.1 + 68483 0.72 0.479743
Target:  5'- cUCUGCGAGaaCCCGGccauGCUGCGCGc-- -3'
miRNA:   3'- -AGAUGCUCgaGGGCC----CGACGUGCuug -5'
25492 3' -57.3 NC_005336.1 + 64759 0.72 0.489254
Target:  5'- --cGCGAGCUCUgugcggCGGaGCgGCGCGAGCa -3'
miRNA:   3'- agaUGCUCGAGG------GCC-CGaCGUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.