miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25492 5' -55.6 NC_005336.1 + 44008 0.66 0.910165
Target:  5'- gGGGCCcGGGuGCCCGuc--CGUGUUCg -3'
miRNA:   3'- aCCUGGaCUU-CGGGCuguuGCACGAG- -5'
25492 5' -55.6 NC_005336.1 + 104023 0.66 0.910165
Target:  5'- cGGACCUGGugcucuacGCgCCGAagcgcuuCGUGUUCg -3'
miRNA:   3'- aCCUGGACUu-------CG-GGCUguu----GCACGAG- -5'
25492 5' -55.6 NC_005336.1 + 115417 0.66 0.910165
Target:  5'- aUGGACCacgucGAGGCggucgCCGGCGACG-GCg- -3'
miRNA:   3'- -ACCUGGa----CUUCG-----GGCUGUUGCaCGag -5'
25492 5' -55.6 NC_005336.1 + 63316 0.66 0.910165
Target:  5'- aGcGCCcGAAGCCCcagcgacaucGACAACGUGgaCg -3'
miRNA:   3'- aCcUGGaCUUCGGG----------CUGUUGCACgaG- -5'
25492 5' -55.6 NC_005336.1 + 9340 0.66 0.908321
Target:  5'- cGuGACCUcgcaGAgcgcgaucgcgagcAGCCCGcGCGugaGCGUGCUCa -3'
miRNA:   3'- aC-CUGGA----CU--------------UCGGGC-UGU---UGCACGAG- -5'
25492 5' -55.6 NC_005336.1 + 63755 0.66 0.903934
Target:  5'- aGGACCUcGAGUCCGcGCAGCaggGcCUCa -3'
miRNA:   3'- aCCUGGAcUUCGGGC-UGUUGca-C-GAG- -5'
25492 5' -55.6 NC_005336.1 + 69080 0.66 0.903934
Target:  5'- cGuGGCC--AAGCaCGugAGCGUGCUCu -3'
miRNA:   3'- aC-CUGGacUUCGgGCugUUGCACGAG- -5'
25492 5' -55.6 NC_005336.1 + 59708 0.66 0.903934
Target:  5'- cGGgcgcugcuACCUGGAGgCCGACGGCcgaacgGUGCg- -3'
miRNA:   3'- aCC--------UGGACUUCgGGCUGUUG------CACGag -5'
25492 5' -55.6 NC_005336.1 + 73553 0.66 0.903934
Target:  5'- aGGAaggUGGAGCCCucgccgaaGACGAUGgGCUCg -3'
miRNA:   3'- aCCUgg-ACUUCGGG--------CUGUUGCaCGAG- -5'
25492 5' -55.6 NC_005336.1 + 53595 0.66 0.897464
Target:  5'- gUGGGCg-GgcGCCgCGAgGcCGUGCUCa -3'
miRNA:   3'- -ACCUGgaCuuCGG-GCUgUuGCACGAG- -5'
25492 5' -55.6 NC_005336.1 + 24011 0.66 0.897464
Target:  5'- aGGACCcGguGCCCGcgaacauCAugGUGCcCa -3'
miRNA:   3'- aCCUGGaCuuCGGGCu------GUugCACGaG- -5'
25492 5' -55.6 NC_005336.1 + 122439 0.66 0.897464
Target:  5'- cGGugCUGGAGCUgcagagcgugauCGugGGCGaGUUCa -3'
miRNA:   3'- aCCugGACUUCGG------------GCugUUGCaCGAG- -5'
25492 5' -55.6 NC_005336.1 + 15000 0.66 0.897464
Target:  5'- cGGGCCUcGGGCUCGcGCGGCGcGCg- -3'
miRNA:   3'- aCCUGGAcUUCGGGC-UGUUGCaCGag -5'
25492 5' -55.6 NC_005336.1 + 106996 0.66 0.897464
Target:  5'- aGGACCUGAcG-CUGGCGGC--GCUCa -3'
miRNA:   3'- aCCUGGACUuCgGGCUGUUGcaCGAG- -5'
25492 5' -55.6 NC_005336.1 + 104300 0.66 0.897464
Target:  5'- cGGACaccc-GCCCGACGgacGCGUGUUg -3'
miRNA:   3'- aCCUGgacuuCGGGCUGU---UGCACGAg -5'
25492 5' -55.6 NC_005336.1 + 129652 0.66 0.890755
Target:  5'- cGGACgUGAAcgCCGcCAGCGUGgUCg -3'
miRNA:   3'- aCCUGgACUUcgGGCuGUUGCACgAG- -5'
25492 5' -55.6 NC_005336.1 + 54100 0.66 0.890755
Target:  5'- cUGGGCUUGAGGCaCGcGCAGC--GCUCg -3'
miRNA:   3'- -ACCUGGACUUCGgGC-UGUUGcaCGAG- -5'
25492 5' -55.6 NC_005336.1 + 99844 0.66 0.883812
Target:  5'- aUGGACCUGcgcggcguGUCCGcGCGACugggGCUCg -3'
miRNA:   3'- -ACCUGGACuu------CGGGC-UGUUGca--CGAG- -5'
25492 5' -55.6 NC_005336.1 + 106573 0.66 0.883812
Target:  5'- cGcACCUGguGCCCGACAacacgcgcaugaACGUguccaaGCUCg -3'
miRNA:   3'- aCcUGGACuuCGGGCUGU------------UGCA------CGAG- -5'
25492 5' -55.6 NC_005336.1 + 111342 0.66 0.883812
Target:  5'- aGGauguGCUUGAAGCgCCGcACgAGCGUGCg- -3'
miRNA:   3'- aCC----UGGACUUCG-GGC-UG-UUGCACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.