miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25492 5' -55.6 NC_005336.1 + 106573 0.66 0.883812
Target:  5'- cGcACCUGguGCCCGACAacacgcgcaugaACGUguccaaGCUCg -3'
miRNA:   3'- aCcUGGACuuCGGGCUGU------------UGCA------CGAG- -5'
25492 5' -55.6 NC_005336.1 + 55605 0.66 0.876641
Target:  5'- cGGugCcucugaacgUGAuGCCCG-CcGCGUGCUCc -3'
miRNA:   3'- aCCugG---------ACUuCGGGCuGuUGCACGAG- -5'
25492 5' -55.6 NC_005336.1 + 124809 0.66 0.876641
Target:  5'- cGaGCCcGAGGCCCGGCGcuCGgcGCUCg -3'
miRNA:   3'- aCcUGGaCUUCGGGCUGUu-GCa-CGAG- -5'
25492 5' -55.6 NC_005336.1 + 103111 0.66 0.876641
Target:  5'- cUGGACgCgGAAGUCCGuGCAG-GUGCUUu -3'
miRNA:   3'- -ACCUG-GaCUUCGGGC-UGUUgCACGAG- -5'
25492 5' -55.6 NC_005336.1 + 120214 0.66 0.876641
Target:  5'- aGGACCUGcucgaaGAGCUcucgCGGCGGCGcUGCg- -3'
miRNA:   3'- aCCUGGAC------UUCGG----GCUGUUGC-ACGag -5'
25492 5' -55.6 NC_005336.1 + 59368 0.67 0.869244
Target:  5'- -cGGCCUGcgcGCcgCCGGCAGCGUGC-Cg -3'
miRNA:   3'- acCUGGACuu-CG--GGCUGUUGCACGaG- -5'
25492 5' -55.6 NC_005336.1 + 30256 0.67 0.866224
Target:  5'- aGGGCCgugauaaggucggGGAGCCUGACGugcuGCG-GCUg -3'
miRNA:   3'- aCCUGGa------------CUUCGGGCUGU----UGCaCGAg -5'
25492 5' -55.6 NC_005336.1 + 85849 0.67 0.861628
Target:  5'- cGGACUgcgUGAuaucGCUCGGgGACGUGCg- -3'
miRNA:   3'- aCCUGG---ACUu---CGGGCUgUUGCACGag -5'
25492 5' -55.6 NC_005336.1 + 56631 0.67 0.861628
Target:  5'- cGGcagcGCCgcgcAGUcgucuuCCGACAGCGUGCUCa -3'
miRNA:   3'- aCC----UGGacu-UCG------GGCUGUUGCACGAG- -5'
25492 5' -55.6 NC_005336.1 + 82678 0.67 0.861628
Target:  5'- gUGGugUgGAAGCUCGAgAGCGccUGCUg -3'
miRNA:   3'- -ACCugGaCUUCGGGCUgUUGC--ACGAg -5'
25492 5' -55.6 NC_005336.1 + 99687 0.67 0.861628
Target:  5'- aUGGACCacacgccgcUGAAGuCCCcGCAcaccuucuACGUGUUCg -3'
miRNA:   3'- -ACCUGG---------ACUUC-GGGcUGU--------UGCACGAG- -5'
25492 5' -55.6 NC_005336.1 + 32975 0.67 0.861628
Target:  5'- cGGAUCgUGggGCCCG-CGGgagGCUCg -3'
miRNA:   3'- aCCUGG-ACuuCGGGCuGUUgcaCGAG- -5'
25492 5' -55.6 NC_005336.1 + 83812 0.67 0.861628
Target:  5'- cUGGACgccggguaCUGggGCgUGGCAACGauUGCUg -3'
miRNA:   3'- -ACCUG--------GACuuCGgGCUGUUGC--ACGAg -5'
25492 5' -55.6 NC_005336.1 + 97673 0.67 0.8538
Target:  5'- cGGcGCCUcGGGgucGCCCGucACAACGUGCgUCg -3'
miRNA:   3'- aCC-UGGA-CUU---CGGGC--UGUUGCACG-AG- -5'
25492 5' -55.6 NC_005336.1 + 13641 0.67 0.8538
Target:  5'- cUGGGCCgcu-GCgCCGAgGACGUcgcGCUCu -3'
miRNA:   3'- -ACCUGGacuuCG-GGCUgUUGCA---CGAG- -5'
25492 5' -55.6 NC_005336.1 + 62473 0.67 0.8538
Target:  5'- cUGGugCUGcGGCaCUG-CGGCGUGCg- -3'
miRNA:   3'- -ACCugGACuUCG-GGCuGUUGCACGag -5'
25492 5' -55.6 NC_005336.1 + 78139 0.67 0.8538
Target:  5'- cGGACCUGAAcaccgacgcGUCCGGCGcgcgcgcggGCGUGgUg -3'
miRNA:   3'- aCCUGGACUU---------CGGGCUGU---------UGCACgAg -5'
25492 5' -55.6 NC_005336.1 + 38657 0.67 0.849003
Target:  5'- aUGGACUUGAuccagggcuugcucgGGUCCGcGCgcacgGugGUGCUCa -3'
miRNA:   3'- -ACCUGGACU---------------UCGGGC-UG-----UugCACGAG- -5'
25492 5' -55.6 NC_005336.1 + 114788 0.67 0.845764
Target:  5'- aGGGCCUGGu-CCCGACGACcG-GCa- -3'
miRNA:   3'- aCCUGGACUucGGGCUGUUG-CaCGag -5'
25492 5' -55.6 NC_005336.1 + 99235 0.67 0.845764
Target:  5'- -aGACgCgcacGCCCGGgAACGUGCUCg -3'
miRNA:   3'- acCUG-GacuuCGGGCUgUUGCACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.