miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25493 3' -53.8 NC_005336.1 + 14090 0.66 0.953754
Target:  5'- -gUCU-CCGCUGacGAaGAGcGCCGCCGg -3'
miRNA:   3'- caAGAgGGCGAC--CUaUUUaCGGCGGC- -5'
25493 3' -53.8 NC_005336.1 + 22759 0.66 0.945159
Target:  5'- -----gCUGCUGGAcgGAAUGCCGCa- -3'
miRNA:   3'- caagagGGCGACCUa-UUUACGGCGgc -5'
25493 3' -53.8 NC_005336.1 + 60012 0.66 0.945159
Target:  5'- -cUCUCCCagagGUUGaGGUGGuGUGCCGCgCGg -3'
miRNA:   3'- caAGAGGG----CGAC-CUAUU-UACGGCG-GC- -5'
25493 3' -53.8 NC_005336.1 + 81820 0.66 0.935579
Target:  5'- ----aCCCGUUGGcgAAGgcgccgcGCCGCCGc -3'
miRNA:   3'- caagaGGGCGACCuaUUUa------CGGCGGC- -5'
25493 3' -53.8 NC_005336.1 + 17828 0.67 0.930414
Target:  5'- ----cCCCugGCUGGG--GAUGCCGUCGg -3'
miRNA:   3'- caagaGGG--CGACCUauUUACGGCGGC- -5'
25493 3' -53.8 NC_005336.1 + 102097 0.67 0.930414
Target:  5'- cGUgcaUCCCGCUGGcgGc--GCUGCUGg -3'
miRNA:   3'- -CAag-AGGGCGACCuaUuuaCGGCGGC- -5'
25493 3' -53.8 NC_005336.1 + 67608 0.67 0.930414
Target:  5'- -gUCUCgCGCgcgucGAUAGG-GCCGCCGu -3'
miRNA:   3'- caAGAGgGCGac---CUAUUUaCGGCGGC- -5'
25493 3' -53.8 NC_005336.1 + 130472 0.67 0.930414
Target:  5'- -gUCUCgCUGCUGGAgauccuGGUGgCCGCgCGc -3'
miRNA:   3'- caAGAG-GGCGACCUau----UUAC-GGCG-GC- -5'
25493 3' -53.8 NC_005336.1 + 125031 0.67 0.924998
Target:  5'- -aUCUgCCCGC-GGAgcc--GCCGCCa -3'
miRNA:   3'- caAGA-GGGCGaCCUauuuaCGGCGGc -5'
25493 3' -53.8 NC_005336.1 + 33975 0.67 0.924998
Target:  5'- cUUCUUCUGCaGG-----UGCCGCCGg -3'
miRNA:   3'- cAAGAGGGCGaCCuauuuACGGCGGC- -5'
25493 3' -53.8 NC_005336.1 + 119554 0.67 0.91933
Target:  5'- ----cCCCGCUGGuuuguaGAGUGCgCGCCc -3'
miRNA:   3'- caagaGGGCGACCua----UUUACG-GCGGc -5'
25493 3' -53.8 NC_005336.1 + 71610 0.67 0.907244
Target:  5'- ---gUCCaCGC-GGAggGAcgGCCGCCGg -3'
miRNA:   3'- caagAGG-GCGaCCUa-UUuaCGGCGGC- -5'
25493 3' -53.8 NC_005336.1 + 103171 0.67 0.907244
Target:  5'- --gCUCCCGCcGGAgcccgAGAaGCCGgCGg -3'
miRNA:   3'- caaGAGGGCGaCCUa----UUUaCGGCgGC- -5'
25493 3' -53.8 NC_005336.1 + 38441 0.68 0.900829
Target:  5'- -cUCUUcgCCGcCUGGAUcg--GCCGCCGc -3'
miRNA:   3'- caAGAG--GGC-GACCUAuuuaCGGCGGC- -5'
25493 3' -53.8 NC_005336.1 + 39628 0.68 0.900829
Target:  5'- -cUCUCgCGCUGGAcgca-GCUGCUGg -3'
miRNA:   3'- caAGAGgGCGACCUauuuaCGGCGGC- -5'
25493 3' -53.8 NC_005336.1 + 55715 0.68 0.900829
Target:  5'- --cCUCUCGCUGGAcgAGGUGCUGaaCCu -3'
miRNA:   3'- caaGAGGGCGACCUa-UUUACGGC--GGc -5'
25493 3' -53.8 NC_005336.1 + 99505 0.68 0.89417
Target:  5'- -gUCggcgCgCCGCUGGAUAGcgGaCCGCgCGc -3'
miRNA:   3'- caAGa---G-GGCGACCUAUUuaC-GGCG-GC- -5'
25493 3' -53.8 NC_005336.1 + 65587 0.68 0.88727
Target:  5'- --gUUCCCGCgggcgaggccgUGGAcGAA-GCCGCCGu -3'
miRNA:   3'- caaGAGGGCG-----------ACCUaUUUaCGGCGGC- -5'
25493 3' -53.8 NC_005336.1 + 139682 0.68 0.88727
Target:  5'- -gUCUCgCgGCUGcg-GGGUGCCGCCu -3'
miRNA:   3'- caAGAG-GgCGACcuaUUUACGGCGGc -5'
25493 3' -53.8 NC_005336.1 + 139682 0.68 0.88727
Target:  5'- -gUCUCgCgGCUGcg-GGGUGCCGCCu -3'
miRNA:   3'- caAGAG-GgCGACcuaUUUACGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.