Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25493 | 3' | -53.8 | NC_005336.1 | + | 133859 | 1.08 | 0.004724 |
Target: 5'- uGUUCUCCCGCUGGAUAAAUGCCGCCGc -3' miRNA: 3'- -CAAGAGGGCGACCUAUUUACGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 60012 | 0.66 | 0.945159 |
Target: 5'- -cUCUCCCagagGUUGaGGUGGuGUGCCGCgCGg -3' miRNA: 3'- caAGAGGG----CGAC-CUAUU-UACGGCG-GC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 22759 | 0.66 | 0.945159 |
Target: 5'- -----gCUGCUGGAcgGAAUGCCGCa- -3' miRNA: 3'- caagagGGCGACCUa-UUUACGGCGgc -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 81820 | 0.66 | 0.935579 |
Target: 5'- ----aCCCGUUGGcgAAGgcgccgcGCCGCCGc -3' miRNA: 3'- caagaGGGCGACCuaUUUa------CGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 130472 | 0.67 | 0.930414 |
Target: 5'- -gUCUCgCUGCUGGAgauccuGGUGgCCGCgCGc -3' miRNA: 3'- caAGAG-GGCGACCUau----UUAC-GGCG-GC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 67608 | 0.67 | 0.930414 |
Target: 5'- -gUCUCgCGCgcgucGAUAGG-GCCGCCGu -3' miRNA: 3'- caAGAGgGCGac---CUAUUUaCGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 33975 | 0.67 | 0.924998 |
Target: 5'- cUUCUUCUGCaGG-----UGCCGCCGg -3' miRNA: 3'- cAAGAGGGCGaCCuauuuACGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 39628 | 0.68 | 0.900829 |
Target: 5'- -cUCUCgCGCUGGAcgca-GCUGCUGg -3' miRNA: 3'- caAGAGgGCGACCUauuuaCGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 38441 | 0.68 | 0.900829 |
Target: 5'- -cUCUUcgCCGcCUGGAUcg--GCCGCCGc -3' miRNA: 3'- caAGAG--GGC-GACCUAuuuaCGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 55715 | 0.68 | 0.900829 |
Target: 5'- --cCUCUCGCUGGAcgAGGUGCUGaaCCu -3' miRNA: 3'- caaGAGGGCGACCUa-UUUACGGC--GGc -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 105273 | 0.73 | 0.625441 |
Target: 5'- uGUUCUCgCCGgaGGAcUGAAcccGCCGCCGc -3' miRNA: 3'- -CAAGAG-GGCgaCCU-AUUUa--CGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 82183 | 0.69 | 0.824019 |
Target: 5'- -cUC-CCCGCccacgUGGAUGGGcGCCGUCGa -3' miRNA: 3'- caAGaGGGCG-----ACCUAUUUaCGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 93577 | 0.69 | 0.832647 |
Target: 5'- --aCUUgCCGCUGGAgcuuuucuuGcgGCCGCCGu -3' miRNA: 3'- caaGAG-GGCGACCUau-------UuaCGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 22163 | 0.68 | 0.872764 |
Target: 5'- -cUCUUCCGCgUGGuc----GCCGCCGu -3' miRNA: 3'- caAGAGGGCG-ACCuauuuaCGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 65587 | 0.68 | 0.88727 |
Target: 5'- --gUUCCCGCgggcgaggccgUGGAcGAA-GCCGCCGu -3' miRNA: 3'- caaGAGGGCG-----------ACCUaUUUaCGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 139682 | 0.68 | 0.88727 |
Target: 5'- -gUCUCgCgGCUGcg-GGGUGCCGCCu -3' miRNA: 3'- caAGAG-GgCGACcuaUUUACGGCGGc -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 99505 | 0.68 | 0.89417 |
Target: 5'- -gUCggcgCgCCGCUGGAUAGcgGaCCGCgCGc -3' miRNA: 3'- caAGa---G-GGCGACCUAUUuaC-GGCG-GC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 39336 | 0.72 | 0.68818 |
Target: 5'- --gCUUgCGCUGccGGUAGGUGCUGCCGg -3' miRNA: 3'- caaGAGgGCGAC--CUAUUUACGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 102097 | 0.67 | 0.930414 |
Target: 5'- cGUgcaUCCCGCUGGcgGc--GCUGCUGg -3' miRNA: 3'- -CAag-AGGGCGACCuaUuuaCGGCGGC- -5' |
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25493 | 3' | -53.8 | NC_005336.1 | + | 17828 | 0.67 | 0.930414 |
Target: 5'- ----cCCCugGCUGGG--GAUGCCGUCGg -3' miRNA: 3'- caagaGGG--CGACCUauUUACGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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