miRNA display CGI


Results 1 - 20 of 292 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25493 5' -58 NC_005336.1 + 74176 0.66 0.855131
Target:  5'- gCCCGcgagcccCGCCGCCGaaaACUAgcauuaUUGGGCc -3'
miRNA:   3'- -GGGCu------GCGGCGGCg--UGAUag----GACUCG- -5'
25493 5' -58 NC_005336.1 + 133695 0.66 0.855131
Target:  5'- gCUGGCGCUGCgcggcgagggCGCGCg--CCUGcuGGCg -3'
miRNA:   3'- gGGCUGCGGCG----------GCGUGauaGGAC--UCG- -5'
25493 5' -58 NC_005336.1 + 133466 0.66 0.855131
Target:  5'- gCCaCGGCGCCuGCUGCcgGCUGgugCgcaUGGGCg -3'
miRNA:   3'- -GG-GCUGCGG-CGGCG--UGAUa--Gg--ACUCG- -5'
25493 5' -58 NC_005336.1 + 133990 0.66 0.855131
Target:  5'- gCCCGuGCGCCcuGCCGCcggagaucgugACcuccAUCCUGuGCu -3'
miRNA:   3'- -GGGC-UGCGG--CGGCG-----------UGa---UAGGACuCG- -5'
25493 5' -58 NC_005336.1 + 64478 0.66 0.855131
Target:  5'- gCCCGAcCGCCGCUacgugaacguGCACU-UCgUGGucGCg -3'
miRNA:   3'- -GGGCU-GCGGCGG----------CGUGAuAGgACU--CG- -5'
25493 5' -58 NC_005336.1 + 135969 0.66 0.855131
Target:  5'- -gCGGCGCUGCUGCGCgcggc-GGGCg -3'
miRNA:   3'- ggGCUGCGGCGGCGUGauaggaCUCG- -5'
25493 5' -58 NC_005336.1 + 7904 0.66 0.855131
Target:  5'- gCCCGGCGuCCaGCgCGUGCUcgagagCCUGcGCg -3'
miRNA:   3'- -GGGCUGC-GG-CG-GCGUGAua----GGACuCG- -5'
25493 5' -58 NC_005336.1 + 135969 0.66 0.855131
Target:  5'- -gCGGCGCUGCUGCGCgcggc-GGGCg -3'
miRNA:   3'- ggGCUGCGGCGGCGUGauaggaCUCG- -5'
25493 5' -58 NC_005336.1 + 66893 0.66 0.855131
Target:  5'- gCUCGcCGCCGUCGUugUucUCCgcaGAGUu -3'
miRNA:   3'- -GGGCuGCGGCGGCGugAu-AGGa--CUCG- -5'
25493 5' -58 NC_005336.1 + 104810 0.66 0.854367
Target:  5'- uUCGG-GCCGCUGUACUA-CCUGcgucugcGGCa -3'
miRNA:   3'- gGGCUgCGGCGGCGUGAUaGGAC-------UCG- -5'
25493 5' -58 NC_005336.1 + 42104 0.66 0.854367
Target:  5'- cCUCGAgGCUGCgcucgagCGUGCggAUCUUGGGCg -3'
miRNA:   3'- -GGGCUgCGGCG-------GCGUGa-UAGGACUCG- -5'
25493 5' -58 NC_005336.1 + 70980 0.66 0.854367
Target:  5'- nUCGAUGCCGCacaCGCACacucgcuUGUCCgccAGCg -3'
miRNA:   3'- gGGCUGCGGCG---GCGUG-------AUAGGac-UCG- -5'
25493 5' -58 NC_005336.1 + 29574 0.66 0.847399
Target:  5'- uCUCGGCGCUGCgCGUGCUGggugCgCUGcuGCg -3'
miRNA:   3'- -GGGCUGCGGCG-GCGUGAUa---G-GACu-CG- -5'
25493 5' -58 NC_005336.1 + 109309 0.66 0.847399
Target:  5'- uCgCGGcCGCCGCCGCGagggCCacgcaGAGCg -3'
miRNA:   3'- -GgGCU-GCGGCGGCGUgauaGGa----CUCG- -5'
25493 5' -58 NC_005336.1 + 68729 0.66 0.847399
Target:  5'- -aCGACGCgGUCGCGC---CCUG-GCu -3'
miRNA:   3'- ggGCUGCGgCGGCGUGauaGGACuCG- -5'
25493 5' -58 NC_005336.1 + 31822 0.66 0.847399
Target:  5'- aCCCGGC-CgGCUGCACgcgCCaGAGg -3'
miRNA:   3'- -GGGCUGcGgCGGCGUGauaGGaCUCg -5'
25493 5' -58 NC_005336.1 + 122805 0.66 0.847399
Target:  5'- -gCGGCGCgaGCUGuCGCUGUUCUGcuacGGCa -3'
miRNA:   3'- ggGCUGCGg-CGGC-GUGAUAGGAC----UCG- -5'
25493 5' -58 NC_005336.1 + 123697 0.66 0.847399
Target:  5'- -aCGcACGCCGCUGCACcAccacgcggacUCCUuucGGGCg -3'
miRNA:   3'- ggGC-UGCGGCGGCGUGaU----------AGGA---CUCG- -5'
25493 5' -58 NC_005336.1 + 34140 0.66 0.847399
Target:  5'- gCCGAuCGCCGCCGC--UAUCa--GGCc -3'
miRNA:   3'- gGGCU-GCGGCGGCGugAUAGgacUCG- -5'
25493 5' -58 NC_005336.1 + 68450 0.66 0.847399
Target:  5'- -gUGGCGCCGCCGgGCgcgccgCCgcgGAcGCg -3'
miRNA:   3'- ggGCUGCGGCGGCgUGaua---GGa--CU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.