miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25494 3' -65.5 NC_005336.1 + 70575 0.66 0.474525
Target:  5'- -gUGCUGGACCUgGCCa---CGGGCGa -3'
miRNA:   3'- uuGCGGCCUGGGgCGGacacGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 103548 0.66 0.473633
Target:  5'- cGCGCCGagcgcGGCCuCCGCCgcgcGUGCGGucaagcagaccguGCGg -3'
miRNA:   3'- uUGCGGC-----CUGG-GGCGGa---CACGCC-------------CGC- -5'
25494 3' -65.5 NC_005336.1 + 3408 0.66 0.465644
Target:  5'- cGCGuCCGcGACCgCCGCCaUGUGCcGcGCGu -3'
miRNA:   3'- uUGC-GGC-CUGG-GGCGG-ACACGcC-CGC- -5'
25494 3' -65.5 NC_005336.1 + 3408 0.66 0.465644
Target:  5'- cGCGuCCGcGACCgCCGCCaUGUGCcGcGCGu -3'
miRNA:   3'- uUGC-GGC-CUGG-GGCGG-ACACGcC-CGC- -5'
25494 3' -65.5 NC_005336.1 + 68334 0.66 0.464761
Target:  5'- aGGCGCCGGugggcGCCgcgcucaaggaagCCGCCUucgacGcGCGGGCGc -3'
miRNA:   3'- -UUGCGGCC-----UGG-------------GGCGGA-----CaCGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 110826 0.66 0.464761
Target:  5'- cGGCGCCGGACagguCUGCgCUGcgcagcgcuucccUGaCGGGCGc -3'
miRNA:   3'- -UUGCGGCCUGg---GGCG-GAC-------------AC-GCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 12638 0.66 0.456851
Target:  5'- cGCGCCGcGugCgCgGCCUcUGCGcGGCGc -3'
miRNA:   3'- uUGCGGC-CugG-GgCGGAcACGC-CCGC- -5'
25494 3' -65.5 NC_005336.1 + 3477 0.66 0.456851
Target:  5'- cGCGCggaCGGGgCCCGCCUccGCGaaGGCGg -3'
miRNA:   3'- uUGCG---GCCUgGGGCGGAcaCGC--CCGC- -5'
25494 3' -65.5 NC_005336.1 + 6084 0.66 0.456851
Target:  5'- aAGC-CCGGGuCCuCCGCggcgaUGUGCGGGUa -3'
miRNA:   3'- -UUGcGGCCU-GG-GGCGg----ACACGCCCGc -5'
25494 3' -65.5 NC_005336.1 + 62602 0.66 0.456851
Target:  5'- -uCGCUGGACCCgCGgCUGc-UGGGCGc -3'
miRNA:   3'- uuGCGGCCUGGG-GCgGACacGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 43511 0.66 0.456851
Target:  5'- -cCGCCGcg-CCCGCCUGcccgguguacGCGGGCGc -3'
miRNA:   3'- uuGCGGCcugGGGCGGACa---------CGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 3477 0.66 0.456851
Target:  5'- cGCGCggaCGGGgCCCGCCUccGCGaaGGCGg -3'
miRNA:   3'- uUGCG---GCCUgGGGCGGAcaCGC--CCGC- -5'
25494 3' -65.5 NC_005336.1 + 122499 0.66 0.451618
Target:  5'- cGACGCC-GACgCCCGCaaucaacgcagcgGUGCGGcGCGu -3'
miRNA:   3'- -UUGCGGcCUG-GGGCGga-----------CACGCC-CGC- -5'
25494 3' -65.5 NC_005336.1 + 136059 0.66 0.448148
Target:  5'- cGCGCCGGcuucccucaccGCgCCCGCCgcgcccCGGGCGc -3'
miRNA:   3'- uUGCGGCC-----------UG-GGGCGGacac--GCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 110944 0.66 0.448148
Target:  5'- cGGCGUggUGGACCCCuGCUUc-GCGGGCu -3'
miRNA:   3'- -UUGCG--GCCUGGGG-CGGAcaCGCCCGc -5'
25494 3' -65.5 NC_005336.1 + 136059 0.66 0.448148
Target:  5'- cGCGCCGGcuucccucaccGCgCCCGCCgcgcccCGGGCGc -3'
miRNA:   3'- uUGCGGCC-----------UG-GGGCGGacac--GCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 42287 0.66 0.439537
Target:  5'- -cCGCCGGACgCaCGCCggcaagucGUGCGGcuGCGc -3'
miRNA:   3'- uuGCGGCCUGgG-GCGGa-------CACGCC--CGC- -5'
25494 3' -65.5 NC_005336.1 + 114338 0.66 0.439537
Target:  5'- cGGCGCCGGACaaCCCGCUgcUGCGcgacgaGGCc -3'
miRNA:   3'- -UUGCGGCCUG--GGGCGGacACGC------CCGc -5'
25494 3' -65.5 NC_005336.1 + 58599 0.66 0.431022
Target:  5'- cGACGCCGGAguccCCCCGCagcacgGCGcGCGc -3'
miRNA:   3'- -UUGCGGCCU----GGGGCGgaca--CGCcCGC- -5'
25494 3' -65.5 NC_005336.1 + 90441 0.66 0.431022
Target:  5'- cGGCGCCGGAgCUgGUCacgcgcGcGCGGGCGa -3'
miRNA:   3'- -UUGCGGCCUgGGgCGGa-----CaCGCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.