miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25494 3' -65.5 NC_005336.1 + 134208 1.06 0.000639
Target:  5'- uAACGCCGGACCCCGCCUGUGCGGGCGa -3'
miRNA:   3'- -UUGCGGCCUGGGGCGGACACGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 67999 0.76 0.110406
Target:  5'- cGCGCCGGGCgCCgCGCUUGUGUugcuggacgcacucgGGGCGg -3'
miRNA:   3'- uUGCGGCCUG-GG-GCGGACACG---------------CCCGC- -5'
25494 3' -65.5 NC_005336.1 + 126384 0.75 0.123737
Target:  5'- gGGCGCgCGGAgcuaaccauCCCCGCCgccgGCGGGCGc -3'
miRNA:   3'- -UUGCG-GCCU---------GGGGCGGaca-CGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 132691 0.74 0.139912
Target:  5'- aGAC-CUGGGCCCCGCCgGUGCGGcugcuGCGc -3'
miRNA:   3'- -UUGcGGCCUGGGGCGGaCACGCC-----CGC- -5'
25494 3' -65.5 NC_005336.1 + 129381 0.74 0.146909
Target:  5'- --gGCaCGGACCCCGCCgucGUGCGcGCGc -3'
miRNA:   3'- uugCG-GCCUGGGGCGGa--CACGCcCGC- -5'
25494 3' -65.5 NC_005336.1 + 43691 0.72 0.20539
Target:  5'- cGCGCCGaGGCCgCGCgU-UGCGGGCGc -3'
miRNA:   3'- uUGCGGC-CUGGgGCGgAcACGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 12603 0.71 0.21026
Target:  5'- -gUGCgGGugUCUGUUUGUGUGGGCGg -3'
miRNA:   3'- uuGCGgCCugGGGCGGACACGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 42504 0.71 0.230743
Target:  5'- uGCGcCCGGGCUcgaaagucuUCGCgUGUGCGGGCc -3'
miRNA:   3'- uUGC-GGCCUGG---------GGCGgACACGCCCGc -5'
25494 3' -65.5 NC_005336.1 + 64850 0.71 0.236121
Target:  5'- cGCGCUGGGCgaCCCGCCcacgugcgcgUGagcgGCGGGCGc -3'
miRNA:   3'- uUGCGGCCUG--GGGCGG----------ACa---CGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 49527 0.7 0.241603
Target:  5'- -gUGCCGGGCUCCGCgCgccgGUGCaGcGGCGg -3'
miRNA:   3'- uuGCGGCCUGGGGCG-Ga---CACG-C-CCGC- -5'
25494 3' -65.5 NC_005336.1 + 14994 0.7 0.241603
Target:  5'- gAGCGCCGGGCCUcgggcuCGCgCggcGcGCGGGCGg -3'
miRNA:   3'- -UUGCGGCCUGGG------GCG-Ga--CaCGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 130910 0.7 0.252885
Target:  5'- gAGCGCgCGGcCCgCUGCCUG-GCGGGgGu -3'
miRNA:   3'- -UUGCG-GCCuGG-GGCGGACaCGCCCgC- -5'
25494 3' -65.5 NC_005336.1 + 133703 0.7 0.264597
Target:  5'- uGCGCggcgaGGGCgCgCGCCUGcugGCGGGCGa -3'
miRNA:   3'- uUGCGg----CCUGgG-GCGGACa--CGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 13136 0.7 0.270616
Target:  5'- aGGCGCCGaGGuCCUCGUCgGcUGUGGGCGg -3'
miRNA:   3'- -UUGCGGC-CU-GGGGCGGaC-ACGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 88123 0.7 0.276745
Target:  5'- gAGCGCCGGcACCCgGCCcu--CGGGCa -3'
miRNA:   3'- -UUGCGGCC-UGGGgCGGacacGCCCGc -5'
25494 3' -65.5 NC_005336.1 + 89381 0.69 0.282984
Target:  5'- uACGCgGGACggcacgucgCCCGCCgcgcagccgGCGGGCGa -3'
miRNA:   3'- uUGCGgCCUG---------GGGCGGaca------CGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 109196 0.69 0.289334
Target:  5'- cACGCgCGGGCcgCCCGCC-GUGCGcGCGa -3'
miRNA:   3'- uUGCG-GCCUG--GGGCGGaCACGCcCGC- -5'
25494 3' -65.5 NC_005336.1 + 133992 0.69 0.291905
Target:  5'- cGGCGCCGG-CCucggCCGCCUgcgccgugcgcguggGUGCGGuGCGc -3'
miRNA:   3'- -UUGCGGCCuGG----GGCGGA---------------CACGCC-CGC- -5'
25494 3' -65.5 NC_005336.1 + 103678 0.69 0.295795
Target:  5'- uACGCaggccaCGGGCCgCCGCCg--GUGGGCGu -3'
miRNA:   3'- uUGCG------GCCUGG-GGCGGacaCGCCCGC- -5'
25494 3' -65.5 NC_005336.1 + 83928 0.69 0.295795
Target:  5'- cACGCCGGugCggggcgCGCCgGUGCgGGGCa -3'
miRNA:   3'- uUGCGGCCugGg-----GCGGaCACG-CCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.