miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25494 5' -53.5 NC_005336.1 + 78442 0.66 0.972959
Target:  5'- aCGUGCAc-GCGUCGGCcaccgagcuguuccaGUCCgcgaAGACGCu -3'
miRNA:   3'- -GCGCGUcuUGUAGCUG---------------CAGG----UCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 101508 0.66 0.971846
Target:  5'- aCGCGCAGcGCGUUGcCG-CCGgcGACGa -3'
miRNA:   3'- -GCGCGUCuUGUAGCuGCaGGU--CUGCg -5'
25494 5' -53.5 NC_005336.1 + 75341 0.66 0.971846
Target:  5'- uCGgGCGGcguCAUCucguGGCuGUUCAGGCGCa -3'
miRNA:   3'- -GCgCGUCuu-GUAG----CUG-CAGGUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 3911 0.66 0.971846
Target:  5'- aGCaGCGGcAGCcgCG-CGUCCAGcgggccgccgcgGCGCa -3'
miRNA:   3'- gCG-CGUC-UUGuaGCuGCAGGUC------------UGCG- -5'
25494 5' -53.5 NC_005336.1 + 101670 0.66 0.971846
Target:  5'- uGCGUGGAGCA--GGCG--CAGGCGCu -3'
miRNA:   3'- gCGCGUCUUGUagCUGCagGUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 14381 0.66 0.971846
Target:  5'- gGUGCGGGAag-CGGCacUCCAcGACGCc -3'
miRNA:   3'- gCGCGUCUUguaGCUGc-AGGU-CUGCG- -5'
25494 5' -53.5 NC_005336.1 + 22640 0.66 0.971846
Target:  5'- gCGCGCaAGAacccagccuGCGUuccCGGCGUCguGcGCGCg -3'
miRNA:   3'- -GCGCG-UCU---------UGUA---GCUGCAGguC-UGCG- -5'
25494 5' -53.5 NC_005336.1 + 58966 0.66 0.971846
Target:  5'- gCGCGCaucaAGAGCG-CGguGCgGUCCuGGCGCc -3'
miRNA:   3'- -GCGCG----UCUUGUaGC--UG-CAGGuCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 95541 0.66 0.971846
Target:  5'- gGCGCGGcGCGgugCG-CGUCgCAGuaGCGCc -3'
miRNA:   3'- gCGCGUCuUGUa--GCuGCAG-GUC--UGCG- -5'
25494 5' -53.5 NC_005336.1 + 132548 0.66 0.971846
Target:  5'- -uCGCGGGAgucCGUCGugGcUCCGcACGCg -3'
miRNA:   3'- gcGCGUCUU---GUAGCugC-AGGUcUGCG- -5'
25494 5' -53.5 NC_005336.1 + 11563 0.66 0.971846
Target:  5'- cCGCGCGGuaGACAcacACGUCCGccaucgcucGGCGCg -3'
miRNA:   3'- -GCGCGUC--UUGUagcUGCAGGU---------CUGCG- -5'
25494 5' -53.5 NC_005336.1 + 121803 0.66 0.971846
Target:  5'- gGUGCAGuACcgCGGCa-UCGGGCGCu -3'
miRNA:   3'- gCGCGUCuUGuaGCUGcaGGUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 109590 0.66 0.971846
Target:  5'- uCGCGCGGGucCggCGgcACGUCCAcGGCGa -3'
miRNA:   3'- -GCGCGUCUu-GuaGC--UGCAGGU-CUGCg -5'
25494 5' -53.5 NC_005336.1 + 35486 0.66 0.971846
Target:  5'- aCGCGCGcGGCGUaGAUGUCCgAGuacCGCu -3'
miRNA:   3'- -GCGCGUcUUGUAgCUGCAGG-UCu--GCG- -5'
25494 5' -53.5 NC_005336.1 + 6726 0.66 0.971846
Target:  5'- gCGCGCAuGAGCAgcagcagCG-UGUgCAGcACGCg -3'
miRNA:   3'- -GCGCGU-CUUGUa------GCuGCAgGUC-UGCG- -5'
25494 5' -53.5 NC_005336.1 + 32409 0.66 0.971846
Target:  5'- uGCgGCAGAGCGU-GACGgCUugggGGAUGCg -3'
miRNA:   3'- gCG-CGUCUUGUAgCUGCaGG----UCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 133134 0.66 0.971562
Target:  5'- gGCGCugcuGGGCuccggCGGCGUCUccgccgcgcucguGGACGUg -3'
miRNA:   3'- gCGCGu---CUUGua---GCUGCAGG-------------UCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 17820 0.66 0.970989
Target:  5'- uGCGCAGAguccguccgugaacGCGUUGACGaUCuGcCGCa -3'
miRNA:   3'- gCGCGUCU--------------UGUAGCUGCaGGuCuGCG- -5'
25494 5' -53.5 NC_005336.1 + 89070 0.66 0.970114
Target:  5'- gGCGguGAACAccgugcugucggucgUCGGCGaccuugCCGcGCGCg -3'
miRNA:   3'- gCGCguCUUGU---------------AGCUGCa-----GGUcUGCG- -5'
25494 5' -53.5 NC_005336.1 + 77267 0.66 0.970114
Target:  5'- gCGCGCAGAGCGgguucgucaucUCcuuuuuggagacaauGGCGUCgcccacgaAGGCGCg -3'
miRNA:   3'- -GCGCGUCUUGU-----------AG---------------CUGCAGg-------UCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.