miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25494 5' -53.5 NC_005336.1 + 120759 0.66 0.96578
Target:  5'- aGCGCcGGGCuguaCGACGcCguGACGUg -3'
miRNA:   3'- gCGCGuCUUGua--GCUGCaGguCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 99451 0.66 0.96578
Target:  5'- gCGUGCGGAGgG-CGACGUCgCu--CGCg -3'
miRNA:   3'- -GCGCGUCUUgUaGCUGCAG-GucuGCG- -5'
25494 5' -53.5 NC_005336.1 + 75946 0.66 0.96578
Target:  5'- -aCGCGGAagACcgCGGCG-CCGGACuuGCg -3'
miRNA:   3'- gcGCGUCU--UGuaGCUGCaGGUCUG--CG- -5'
25494 5' -53.5 NC_005336.1 + 85501 0.66 0.958849
Target:  5'- uCGCGCGGucgcCAUCGACG-CUc-ACGCu -3'
miRNA:   3'- -GCGCGUCuu--GUAGCUGCaGGucUGCG- -5'
25494 5' -53.5 NC_005336.1 + 105544 0.66 0.962426
Target:  5'- uGCGCcgGGGGCAggcuccCGUCCAG-CGCg -3'
miRNA:   3'- gCGCG--UCUUGUagcu--GCAGGUCuGCG- -5'
25494 5' -53.5 NC_005336.1 + 130359 0.66 0.962426
Target:  5'- gCGCGCcGAGCGagguucUCGGCGagcCCGaGCGCg -3'
miRNA:   3'- -GCGCGuCUUGU------AGCUGCa--GGUcUGCG- -5'
25494 5' -53.5 NC_005336.1 + 84234 0.66 0.962426
Target:  5'- -cCGCGGGGCAguggCGAUGgcgCUAGGgGCg -3'
miRNA:   3'- gcGCGUCUUGUa---GCUGCa--GGUCUgCG- -5'
25494 5' -53.5 NC_005336.1 + 32262 0.66 0.962426
Target:  5'- cCGCGCGGAAgc-CGGUGUUCAucGGCGCg -3'
miRNA:   3'- -GCGCGUCUUguaGCUGCAGGU--CUGCG- -5'
25494 5' -53.5 NC_005336.1 + 11690 0.66 0.96578
Target:  5'- gCGCGCAGcuCGUCcGCGUCCuuguccuUGCu -3'
miRNA:   3'- -GCGCGUCuuGUAGcUGCAGGucu----GCG- -5'
25494 5' -53.5 NC_005336.1 + 88345 0.66 0.958849
Target:  5'- gGUGUAGAGCAUgGuCG-CgCGGGCGUa -3'
miRNA:   3'- gCGCGUCUUGUAgCuGCaG-GUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 26472 0.66 0.961022
Target:  5'- aCGCGCGcGAACAcggccgcguucccgUCGGCGUCggugcugCGGuCGCc -3'
miRNA:   3'- -GCGCGU-CUUGU--------------AGCUGCAG-------GUCuGCG- -5'
25494 5' -53.5 NC_005336.1 + 47402 0.66 0.96578
Target:  5'- aGcCGCuGGGCGUCGGCGac--GACGCg -3'
miRNA:   3'- gC-GCGuCUUGUAGCUGCagguCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 100723 0.66 0.962426
Target:  5'- aGCGCcGAgGCGggCGAUGUCUAcGGCGUg -3'
miRNA:   3'- gCGCGuCU-UGUa-GCUGCAGGU-CUGCG- -5'
25494 5' -53.5 NC_005336.1 + 75516 0.66 0.962078
Target:  5'- uGuCGCAG-GCGUUgaaGGCGUCCAcgagcuuGGCGCg -3'
miRNA:   3'- gC-GCGUCuUGUAG---CUGCAGGU-------CUGCG- -5'
25494 5' -53.5 NC_005336.1 + 29432 0.66 0.962426
Target:  5'- gCGUGCAGGcGCAUgGACG--CAGACGa -3'
miRNA:   3'- -GCGCGUCU-UGUAgCUGCagGUCUGCg -5'
25494 5' -53.5 NC_005336.1 + 59321 0.66 0.958849
Target:  5'- gGUGC---GCcgCGACGUCCGG-CGUg -3'
miRNA:   3'- gCGCGucuUGuaGCUGCAGGUCuGCG- -5'
25494 5' -53.5 NC_005336.1 + 67568 0.66 0.958479
Target:  5'- gGCGCGGAagGCGUUGAacagcucCGccagCCAGGCuGCg -3'
miRNA:   3'- gCGCGUCU--UGUAGCU-------GCa---GGUCUG-CG- -5'
25494 5' -53.5 NC_005336.1 + 9239 0.66 0.958849
Target:  5'- aGCGCGGuc--UCGAUGUCCAcgGAgGUg -3'
miRNA:   3'- gCGCGUCuuguAGCUGCAGGU--CUgCG- -5'
25494 5' -53.5 NC_005336.1 + 69821 0.66 0.96578
Target:  5'- gCGCGCuGGACA-CGGCcGUguaccgCCAcGGCGCg -3'
miRNA:   3'- -GCGCGuCUUGUaGCUG-CA------GGU-CUGCG- -5'
25494 5' -53.5 NC_005336.1 + 130178 0.66 0.96578
Target:  5'- gCGCGCAGuuACGcgGGCGUCacgccgcuGGCGCa -3'
miRNA:   3'- -GCGCGUCu-UGUagCUGCAGgu------CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.