miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25494 5' -53.5 NC_005336.1 + 52102 0.66 0.968918
Target:  5'- uGCGC-GAGCGaggcuUCGACGgcgCgCAGGCuGCg -3'
miRNA:   3'- gCGCGuCUUGU-----AGCUGCa--G-GUCUG-CG- -5'
25494 5' -53.5 NC_005336.1 + 8277 0.66 0.968918
Target:  5'- uCGCGCAuGACGcUCG-CG-CgCGGGCGCg -3'
miRNA:   3'- -GCGCGUcUUGU-AGCuGCaG-GUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 100010 0.66 0.968918
Target:  5'- uGCGCacguuuAGGACGacugCGAgcaUGUCCAcGGCGCg -3'
miRNA:   3'- gCGCG------UCUUGUa---GCU---GCAGGU-CUGCG- -5'
25494 5' -53.5 NC_005336.1 + 124633 0.66 0.968918
Target:  5'- gCGUGCu--GCG-CGACGUCauggaGGACGUg -3'
miRNA:   3'- -GCGCGucuUGUaGCUGCAGg----UCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 72547 0.66 0.968918
Target:  5'- -cUGguGAACAaccUgGACGugcucuUCCAGGCGCa -3'
miRNA:   3'- gcGCguCUUGU---AgCUGC------AGGUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 15834 0.66 0.968918
Target:  5'- gCGCGCGGucACGUCcGCGcCCGcGGCGa -3'
miRNA:   3'- -GCGCGUCu-UGUAGcUGCaGGU-CUGCg -5'
25494 5' -53.5 NC_005336.1 + 124381 0.66 0.968918
Target:  5'- uGCGCAuGAcaggccGCAUCGACG-CCAG-Ca- -3'
miRNA:   3'- gCGCGU-CU------UGUAGCUGCaGGUCuGcg -5'
25494 5' -53.5 NC_005336.1 + 129659 0.66 0.968918
Target:  5'- aCGUGCAcaccgccgcGAGCGcCGAC-UCCuGGGCGCa -3'
miRNA:   3'- -GCGCGU---------CUUGUaGCUGcAGG-UCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 92467 0.66 0.968918
Target:  5'- uCGCGCucGGGCA-CGAUGUUCAucuccGGCGUg -3'
miRNA:   3'- -GCGCGu-CUUGUaGCUGCAGGU-----CUGCG- -5'
25494 5' -53.5 NC_005336.1 + 100777 0.66 0.968614
Target:  5'- aCGCGCuucgAGGAgGUCGcGCGccggggcUCgCGGACGCg -3'
miRNA:   3'- -GCGCG----UCUUgUAGC-UGC-------AG-GUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 120759 0.66 0.96578
Target:  5'- aGCGCcGGGCuguaCGACGcCguGACGUg -3'
miRNA:   3'- gCGCGuCUUGua--GCUGCaGguCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 88151 0.66 0.96578
Target:  5'- uCGaucaGUAGcGCGUCGcCGUCgCAGACGa -3'
miRNA:   3'- -GCg---CGUCuUGUAGCuGCAG-GUCUGCg -5'
25494 5' -53.5 NC_005336.1 + 47402 0.66 0.96578
Target:  5'- aGcCGCuGGGCGUCGGCGac--GACGCg -3'
miRNA:   3'- gC-GCGuCUUGUAGCUGCagguCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 114487 0.66 0.96578
Target:  5'- gGCGCcuccGACAUCG-CGUUCucgcGGCGCg -3'
miRNA:   3'- gCGCGuc--UUGUAGCuGCAGGu---CUGCG- -5'
25494 5' -53.5 NC_005336.1 + 130178 0.66 0.96578
Target:  5'- gCGCGCAGuuACGcgGGCGUCacgccgcuGGCGCa -3'
miRNA:   3'- -GCGCGUCu-UGUagCUGCAGgu------CUGCG- -5'
25494 5' -53.5 NC_005336.1 + 69821 0.66 0.96578
Target:  5'- gCGCGCuGGACA-CGGCcGUguaccgCCAcGGCGCg -3'
miRNA:   3'- -GCGCGuCUUGUaGCUG-CA------GGU-CUGCG- -5'
25494 5' -53.5 NC_005336.1 + 99451 0.66 0.96578
Target:  5'- gCGUGCGGAGgG-CGACGUCgCu--CGCg -3'
miRNA:   3'- -GCGCGUCUUgUaGCUGCAG-GucuGCG- -5'
25494 5' -53.5 NC_005336.1 + 11690 0.66 0.96578
Target:  5'- gCGCGCAGcuCGUCcGCGUCCuuguccuUGCu -3'
miRNA:   3'- -GCGCGUCuuGUAGcUGCAGGucu----GCG- -5'
25494 5' -53.5 NC_005336.1 + 75946 0.66 0.96578
Target:  5'- -aCGCGGAagACcgCGGCG-CCGGACuuGCg -3'
miRNA:   3'- gcGCGUCU--UGuaGCUGCaGGUCUG--CG- -5'
25494 5' -53.5 NC_005336.1 + 128627 0.66 0.96578
Target:  5'- gCGCGCGGccaucAACcgCGGCGUgCGcguGCGCg -3'
miRNA:   3'- -GCGCGUC-----UUGuaGCUGCAgGUc--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.