miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25494 5' -53.5 NC_005336.1 + 85323 0.74 0.635095
Target:  5'- uCGCGCAGcGACAcgaaGACGUCcCGGACGa -3'
miRNA:   3'- -GCGCGUC-UUGUag--CUGCAG-GUCUGCg -5'
25494 5' -53.5 NC_005336.1 + 10165 0.75 0.563124
Target:  5'- uCGUGCgAGAGCAccUCGGUGUCgGGGCGCg -3'
miRNA:   3'- -GCGCG-UCUUGU--AGCUGCAGgUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 70306 0.75 0.563124
Target:  5'- cCGCGCAGAucauCAUCG-CGUCCgAGGuCGUg -3'
miRNA:   3'- -GCGCGUCUu---GUAGCuGCAGG-UCU-GCG- -5'
25494 5' -53.5 NC_005336.1 + 75097 0.75 0.573313
Target:  5'- gCGCGCGGGcCcgCGcGCGUCCgccGGGCGCg -3'
miRNA:   3'- -GCGCGUCUuGuaGC-UGCAGG---UCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 25852 0.75 0.593813
Target:  5'- gGCGCcgGGAACAUCcgccgGACGUCCAcGGcCGCg -3'
miRNA:   3'- gCGCG--UCUUGUAG-----CUGCAGGU-CU-GCG- -5'
25494 5' -53.5 NC_005336.1 + 100516 0.74 0.614426
Target:  5'- uCGCGgAGAGCuUCGGCaUCCuGGACGCc -3'
miRNA:   3'- -GCGCgUCUUGuAGCUGcAGG-UCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 91718 0.74 0.614426
Target:  5'- cCGCGC-GAGCAuggucccgUCGACcagCCGGGCGCg -3'
miRNA:   3'- -GCGCGuCUUGU--------AGCUGca-GGUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 29868 0.74 0.624757
Target:  5'- gCGCGCAGGuCG-CGACGUCgucGACGCu -3'
miRNA:   3'- -GCGCGUCUuGUaGCUGCAGgu-CUGCG- -5'
25494 5' -53.5 NC_005336.1 + 58087 0.74 0.624757
Target:  5'- uGCGCauGGAGCG-CGAgaUCCAGGCGCg -3'
miRNA:   3'- gCGCG--UCUUGUaGCUgcAGGUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 6199 0.76 0.552983
Target:  5'- gCGCGCAcGAGCAguuccgUCGGCGgCCGGcGCGCg -3'
miRNA:   3'- -GCGCGU-CUUGU------AGCUGCaGGUC-UGCG- -5'
25494 5' -53.5 NC_005336.1 + 17725 0.76 0.539884
Target:  5'- aCGCGCgAGGacucaaucgugcgcGCGUcCGGCGcCCAGGCGCg -3'
miRNA:   3'- -GCGCG-UCU--------------UGUA-GCUGCaGGUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 44269 0.76 0.532874
Target:  5'- gCGCGCGGcGCG-CG-CGUCaCGGACGCg -3'
miRNA:   3'- -GCGCGUCuUGUaGCuGCAG-GUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 109461 0.83 0.241783
Target:  5'- gCGCGCAGcAUGUCGAagcggugguagcUGUCCAGGCGCg -3'
miRNA:   3'- -GCGCGUCuUGUAGCU------------GCAGGUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 15019 0.82 0.260018
Target:  5'- gCGCGCGGGcgGCGUCGGCGcgcgccCCGGGCGCc -3'
miRNA:   3'- -GCGCGUCU--UGUAGCUGCa-----GGUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 115747 0.81 0.29288
Target:  5'- cCGCGCcgcugcguguacGGGGCAUgGACGUCCGGuGCGCg -3'
miRNA:   3'- -GCGCG------------UCUUGUAgCUGCAGGUC-UGCG- -5'
25494 5' -53.5 NC_005336.1 + 5981 0.8 0.321439
Target:  5'- gCGCGCAGAcguccagcaGCGUCG-CGUCCGuGugGCa -3'
miRNA:   3'- -GCGCGUCU---------UGUAGCuGCAGGU-CugCG- -5'
25494 5' -53.5 NC_005336.1 + 54113 0.78 0.419165
Target:  5'- aCGCGCAGcGC-UCGuCGUCCGGguGCGCg -3'
miRNA:   3'- -GCGCGUCuUGuAGCuGCAGGUC--UGCG- -5'
25494 5' -53.5 NC_005336.1 + 136385 0.78 0.446267
Target:  5'- aCGCGCGGcACAUggCGGCgGUCgCGGACGCg -3'
miRNA:   3'- -GCGCGUCuUGUA--GCUG-CAG-GUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 94306 0.77 0.464869
Target:  5'- uGCGCGGAACGgcgGGCGcCgAGACGCa -3'
miRNA:   3'- gCGCGUCUUGUag-CUGCaGgUCUGCG- -5'
25494 5' -53.5 NC_005336.1 + 16668 0.76 0.522918
Target:  5'- gGCGCAGGGCAgcggCGuGCGUCCGuccgccGGCGCc -3'
miRNA:   3'- gCGCGUCUUGUa---GC-UGCAGGU------CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.