miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25500 5' -55.4 NC_005336.1 + 58807 0.66 0.897464
Target:  5'- --cGGCc--UGACCcuggaguucGCGCGCGAGCGc -3'
miRNA:   3'- caaUCGucaACUGG---------CGCGCGCUCGCu -5'
25500 5' -55.4 NC_005336.1 + 76996 0.66 0.916152
Target:  5'- --cGGCGcaUGACCGgGUGCGAgaccGCGGc -3'
miRNA:   3'- caaUCGUcaACUGGCgCGCGCU----CGCU- -5'
25500 5' -55.4 NC_005336.1 + 107768 0.66 0.916152
Target:  5'- ---cGCGGgcgUGAUCGCGuCGCGuGCu- -3'
miRNA:   3'- caauCGUCa--ACUGGCGC-GCGCuCGcu -5'
25500 5' -55.4 NC_005336.1 + 71546 0.66 0.910165
Target:  5'- --cAGCGGcUGGCCGCGCacuucaacgugcGCGuGCa- -3'
miRNA:   3'- caaUCGUCaACUGGCGCG------------CGCuCGcu -5'
25500 5' -55.4 NC_005336.1 + 99600 0.66 0.883812
Target:  5'- ---cGguGcUGAucuCCGCGCGCG-GCGAc -3'
miRNA:   3'- caauCguCaACU---GGCGCGCGCuCGCU- -5'
25500 5' -55.4 NC_005336.1 + 58693 0.66 0.883812
Target:  5'- --cAGCGGcgGccCCGCGCGCGuGCa- -3'
miRNA:   3'- caaUCGUCaaCu-GGCGCGCGCuCGcu -5'
25500 5' -55.4 NC_005336.1 + 33649 0.66 0.883812
Target:  5'- -gUAGCGcGUgccGCCGCacucaauguGCGCGGGCGGc -3'
miRNA:   3'- caAUCGU-CAac-UGGCG---------CGCGCUCGCU- -5'
25500 5' -55.4 NC_005336.1 + 131512 0.66 0.890755
Target:  5'- ----aCAGUccacgcGcCCGCGCGCGAGCGu -3'
miRNA:   3'- caaucGUCAa-----CuGGCGCGCGCUCGCu -5'
25500 5' -55.4 NC_005336.1 + 8183 0.66 0.910165
Target:  5'- --cGGCAGgaagaacaucGACCGCGCGgCGGGaaCGAc -3'
miRNA:   3'- caaUCGUCaa--------CUGGCGCGC-GCUC--GCU- -5'
25500 5' -55.4 NC_005336.1 + 3744 0.66 0.897464
Target:  5'- ---cGCGGUgagGgaaGCCgGCGCGCGGGCu- -3'
miRNA:   3'- caauCGUCAa--C---UGG-CGCGCGCUCGcu -5'
25500 5' -55.4 NC_005336.1 + 12623 0.66 0.910165
Target:  5'- --gGGCGGgcugGAUCGCGCGCc-GCGu -3'
miRNA:   3'- caaUCGUCaa--CUGGCGCGCGcuCGCu -5'
25500 5' -55.4 NC_005336.1 + 91709 0.66 0.910165
Target:  5'- --gAGCAGgu--CC-CGCGCGAGCa- -3'
miRNA:   3'- caaUCGUCaacuGGcGCGCGCUCGcu -5'
25500 5' -55.4 NC_005336.1 + 101472 0.66 0.890755
Target:  5'- --aAGCuGgaGGCgGUGCGCGGGCu- -3'
miRNA:   3'- caaUCGuCaaCUGgCGCGCGCUCGcu -5'
25500 5' -55.4 NC_005336.1 + 36254 0.66 0.890755
Target:  5'- --cGGCGGa-GGCCGCGCuCGGcGCGAc -3'
miRNA:   3'- caaUCGUCaaCUGGCGCGcGCU-CGCU- -5'
25500 5' -55.4 NC_005336.1 + 88480 0.66 0.897464
Target:  5'- --cAGCGug-GACgcgaCGCGCGCGGGCGc -3'
miRNA:   3'- caaUCGUcaaCUG----GCGCGCGCUCGCu -5'
25500 5' -55.4 NC_005336.1 + 139327 0.66 0.896803
Target:  5'- uUUAGCGGggccgucgcgGACgCGCGgccgcccgcggcaCGCGAGCGGg -3'
miRNA:   3'- cAAUCGUCaa--------CUG-GCGC-------------GCGCUCGCU- -5'
25500 5' -55.4 NC_005336.1 + 75819 0.66 0.890755
Target:  5'- ---cGCGGUccuUGACgGCGCGC--GCGAa -3'
miRNA:   3'- caauCGUCA---ACUGgCGCGCGcuCGCU- -5'
25500 5' -55.4 NC_005336.1 + 130053 0.66 0.897464
Target:  5'- ---cGCuGcUGGCUGCcgGCGCGAGCGu -3'
miRNA:   3'- caauCGuCaACUGGCG--CGCGCUCGCu -5'
25500 5' -55.4 NC_005336.1 + 95974 0.66 0.90708
Target:  5'- --gGGCGGgccucgcacgaGCCGCGCGCGgcucgccagcucuGGCGAg -3'
miRNA:   3'- caaUCGUCaac--------UGGCGCGCGC-------------UCGCU- -5'
25500 5' -55.4 NC_005336.1 + 35996 0.66 0.903298
Target:  5'- ---uGCGGUcggucucUGugCGCGuCGCGcAGCGGu -3'
miRNA:   3'- caauCGUCA-------ACugGCGC-GCGC-UCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.