miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25503 3' -56.6 NC_005337.1 + 13989 0.66 0.880443
Target:  5'- cGUgCUCGAGUUAGUCCGgaucUUCGUGa- -3'
miRNA:   3'- uCAaGAGCUCAGUCGGGC----AGGCACgc -5'
25503 3' -56.6 NC_005337.1 + 100691 0.67 0.842559
Target:  5'- cGggCUCGAGaCGGUCUGUCuCG-GCGa -3'
miRNA:   3'- uCaaGAGCUCaGUCGGGCAG-GCaCGC- -5'
25503 3' -56.6 NC_005337.1 + 90282 0.67 0.834385
Target:  5'- gAGUUCUCGAGcgucUCGGCCUccucgccgCCGgGCGc -3'
miRNA:   3'- -UCAAGAGCUC----AGUCGGGca------GGCaCGC- -5'
25503 3' -56.6 NC_005337.1 + 12251 0.67 0.817496
Target:  5'- uGUUCUCGAG-CAuGUCCGUCgCG-GCc -3'
miRNA:   3'- uCAAGAGCUCaGU-CGGGCAG-GCaCGc -5'
25503 3' -56.6 NC_005337.1 + 128032 0.67 0.808795
Target:  5'- -----aCGAGUCGGCCaaggCCGUGCa -3'
miRNA:   3'- ucaagaGCUCAGUCGGgca-GGCACGc -5'
25503 3' -56.6 NC_005337.1 + 90102 0.68 0.799936
Target:  5'- --cUCUCGccGGUCAGCUgGUCgGUGuCGa -3'
miRNA:   3'- ucaAGAGC--UCAGUCGGgCAGgCAC-GC- -5'
25503 3' -56.6 NC_005337.1 + 112080 0.68 0.781772
Target:  5'- --cUCUCG-GUgAGCCCG-CUGUGCc -3'
miRNA:   3'- ucaAGAGCuCAgUCGGGCaGGCACGc -5'
25503 3' -56.6 NC_005337.1 + 29822 0.68 0.763073
Target:  5'- uAGgUCUCGaAGUCGGUCuCGUUgGUGCu -3'
miRNA:   3'- -UCaAGAGC-UCAGUCGG-GCAGgCACGc -5'
25503 3' -56.6 NC_005337.1 + 45544 0.68 0.763073
Target:  5'- cGGUgCUgGAGUCGGCgCCG-CCGUGg- -3'
miRNA:   3'- -UCAaGAgCUCAGUCG-GGCaGGCACgc -5'
25503 3' -56.6 NC_005337.1 + 115919 0.69 0.714463
Target:  5'- uGGggUaCGAGUCGGCCaCGggcCCGUGCu -3'
miRNA:   3'- -UCaaGaGCUCAGUCGG-GCa--GGCACGc -5'
25503 3' -56.6 NC_005337.1 + 91625 0.7 0.643717
Target:  5'- --aUCUCGGG-CGGCCCGaggaUGUGCGg -3'
miRNA:   3'- ucaAGAGCUCaGUCGGGCag--GCACGC- -5'
25503 3' -56.6 NC_005337.1 + 101090 0.71 0.61309
Target:  5'- ----gUCGGGagGGCCCGUCCG-GCGc -3'
miRNA:   3'- ucaagAGCUCagUCGGGCAGGCaCGC- -5'
25503 3' -56.6 NC_005337.1 + 66702 0.74 0.428992
Target:  5'- uAGcgCUUuagGAGcUCGGCCaCGUCCGUGCGg -3'
miRNA:   3'- -UCaaGAG---CUC-AGUCGG-GCAGGCACGC- -5'
25503 3' -56.6 NC_005337.1 + 43695 0.76 0.345918
Target:  5'- gGGUUC-CGGGUCcacgugAGCUCGUCCGUGUa -3'
miRNA:   3'- -UCAAGaGCUCAG------UCGGGCAGGCACGc -5'
25503 3' -56.6 NC_005337.1 + 133934 1.08 0.002637
Target:  5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3'
miRNA:   3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5'
25503 3' -56.6 NC_005337.1 + 133995 1.08 0.002637
Target:  5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3'
miRNA:   3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5'
25503 3' -56.6 NC_005337.1 + 133873 1.08 0.002637
Target:  5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3'
miRNA:   3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5'
25503 3' -56.6 NC_005337.1 + 134231 1.08 0.002637
Target:  5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3'
miRNA:   3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5'
25503 3' -56.6 NC_005337.1 + 134178 1.08 0.002637
Target:  5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3'
miRNA:   3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5'
25503 3' -56.6 NC_005337.1 + 134117 1.08 0.002637
Target:  5'- gAGUUCUCGAGUCAGCCCGUCCGUGCGu -3'
miRNA:   3'- -UCAAGAGCUCAGUCGGGCAGGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.