miRNA display CGI


Results 61 - 80 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 3' -55 NC_005337.1 + 110333 0.75 0.434196
Target:  5'- gCCCggccGGGCGGCGUCG-CGCGCGCc- -3'
miRNA:   3'- gGGGa---CCUGUUGUAGCaGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 111275 0.66 0.922041
Target:  5'- cCUCCUGGACGACAUCcau-CGUAUAu -3'
miRNA:   3'- -GGGGACCUGUUGUAGcagcGCGUGUu -5'
25504 3' -55 NC_005337.1 + 115042 0.7 0.755478
Target:  5'- gCCCCUgccaGGGCAugGcCGUCGUGCuCAGc -3'
miRNA:   3'- -GGGGA----CCUGUugUaGCAGCGCGuGUU- -5'
25504 3' -55 NC_005337.1 + 115653 0.67 0.893558
Target:  5'- aCCCCUccGGCAACGUCaUCcugcagauacuccgcGCGCACAAg -3'
miRNA:   3'- -GGGGAc-CUGUUGUAGcAG---------------CGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 117281 0.66 0.910291
Target:  5'- gCCCCgcccgauaUGuuCGACGUgGUCGCGUACGc -3'
miRNA:   3'- -GGGG--------ACcuGUUGUAgCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 117401 0.69 0.802596
Target:  5'- uCCCCgaGGACGACAUCGUggacuucgagagCGUGUcCAAc -3'
miRNA:   3'- -GGGGa-CCUGUUGUAGCA------------GCGCGuGUU- -5'
25504 3' -55 NC_005337.1 + 118923 0.67 0.872271
Target:  5'- gCgCCUGGaagcgucgcgcgggcGCAGCGUgCGUCGCGCGa-- -3'
miRNA:   3'- -GgGGACC---------------UGUUGUA-GCAGCGCGUguu -5'
25504 3' -55 NC_005337.1 + 119847 0.65 0.927546
Target:  5'- aCCCggcgccaGcGGCGGCA-CGUCGCGCgGCAAg -3'
miRNA:   3'- gGGGa------C-CUGUUGUaGCAGCGCG-UGUU- -5'
25504 3' -55 NC_005337.1 + 119914 0.68 0.811578
Target:  5'- aCCaCCUGGcgGGCAUCGUCGUggaguGCAUAGa -3'
miRNA:   3'- -GG-GGACCugUUGUAGCAGCG-----CGUGUU- -5'
25504 3' -55 NC_005337.1 + 120215 0.66 0.922041
Target:  5'- aCCUCgccgaggcGGACAGCAUCGccgagcagugCGUGUACGAa -3'
miRNA:   3'- -GGGGa-------CCUGUUGUAGCa---------GCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 120565 0.66 0.910291
Target:  5'- -aCCUGGACGugAUCugcuccacCGCGCACc- -3'
miRNA:   3'- ggGGACCUGUugUAGca------GCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 122533 0.68 0.853793
Target:  5'- gCCCUGGcGCGGCGaCG-CGCGCuGCAGc -3'
miRNA:   3'- gGGGACC-UGUUGUaGCaGCGCG-UGUU- -5'
25504 3' -55 NC_005337.1 + 122987 0.7 0.715701
Target:  5'- aUCgUGGACGACAcCuUCGCGCACGu -3'
miRNA:   3'- gGGgACCUGUUGUaGcAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 124424 0.7 0.705547
Target:  5'- gUCCUGGGCAACGcCG-CGCGCGgGu -3'
miRNA:   3'- gGGGACCUGUUGUaGCaGCGCGUgUu -5'
25504 3' -55 NC_005337.1 + 126791 0.74 0.530349
Target:  5'- gCCCCgUGGACcugGACGUCGU-GCGCGCc- -3'
miRNA:   3'- -GGGG-ACCUG---UUGUAGCAgCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 130274 0.68 0.845736
Target:  5'- gCCCCaaGGACGugcGCAUCGUCcaaGCGCugcuCAAg -3'
miRNA:   3'- -GGGGa-CCUGU---UGUAGCAG---CGCGu---GUU- -5'
25504 3' -55 NC_005337.1 + 130574 0.72 0.602006
Target:  5'- cCCCCUggcgccgaGGACAagaaGCcgCGUCGgGCGCGAc -3'
miRNA:   3'- -GGGGA--------CCUGU----UGuaGCAGCgCGUGUU- -5'
25504 3' -55 NC_005337.1 + 130950 0.66 0.904048
Target:  5'- uUCCUGGACGccgGCGUggcCGUggaCGUGCGCAAc -3'
miRNA:   3'- gGGGACCUGU---UGUA---GCA---GCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 131227 0.66 0.910291
Target:  5'- gCCgCCggugUGuGGCGuACGUgGUCGCGCACAu -3'
miRNA:   3'- -GG-GG----AC-CUGU-UGUAgCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 131545 0.66 0.922041
Target:  5'- gCCCgcuaccGGCgGACGUCGUCGCGCuCGu -3'
miRNA:   3'- gGGGac----CUG-UUGUAGCAGCGCGuGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.