miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25506 5' -50.5 NC_005337.1 + 53411 0.66 0.991846
Target:  5'- -aUCGAGAUCUUCAaGCAgcuggucuucuUCUGCCa-- -3'
miRNA:   3'- cgAGUUCUAGGAGU-CGU-----------AGAUGGcac -5'
25506 5' -50.5 NC_005337.1 + 82274 0.68 0.975192
Target:  5'- cGUUCGAGGUCgUgAGCAUCUuCC-UGg -3'
miRNA:   3'- -CGAGUUCUAGgAgUCGUAGAuGGcAC- -5'
25506 5' -50.5 NC_005337.1 + 122638 0.68 0.972404
Target:  5'- cGCcCGAGAaguUCCUgGGCuUCUACCGc- -3'
miRNA:   3'- -CGaGUUCU---AGGAgUCGuAGAUGGCac -5'
25506 5' -50.5 NC_005337.1 + 85415 0.68 0.969396
Target:  5'- cGC-CGAGAUCagCAGCAUCUcCCGg- -3'
miRNA:   3'- -CGaGUUCUAGgaGUCGUAGAuGGCac -5'
25506 5' -50.5 NC_005337.1 + 95118 0.68 0.969396
Target:  5'- cGCUCGcGGucGUCCUcCAGCGUC-GCCGUc -3'
miRNA:   3'- -CGAGU-UC--UAGGA-GUCGUAGaUGGCAc -5'
25506 5' -50.5 NC_005337.1 + 38113 0.68 0.966162
Target:  5'- uGCUCGGGcUCCUCuucGCcAUCUACgCGUu -3'
miRNA:   3'- -CGAGUUCuAGGAGu--CG-UAGAUG-GCAc -5'
25506 5' -50.5 NC_005337.1 + 87459 0.69 0.94637
Target:  5'- cGCUgGAGAUggccagcgcgcCCUCGGCGUCccagACCGa- -3'
miRNA:   3'- -CGAgUUCUA-----------GGAGUCGUAGa---UGGCac -5'
25506 5' -50.5 NC_005337.1 + 80841 0.71 0.887406
Target:  5'- aGCUCucGAUCUUguGCGUC-ACCGUc -3'
miRNA:   3'- -CGAGuuCUAGGAguCGUAGaUGGCAc -5'
25506 5' -50.5 NC_005337.1 + 45519 0.77 0.607587
Target:  5'- cCUCcGGGUCCUCGGCGUCgggaGCCGg- -3'
miRNA:   3'- cGAGuUCUAGGAGUCGUAGa---UGGCac -5'
25506 5' -50.5 NC_005337.1 + 131440 1.12 0.005125
Target:  5'- cGCUCAAGAUCCUCAGCAUCUACCGUGa -3'
miRNA:   3'- -CGAGUUCUAGGAGUCGUAGAUGGCAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.