miRNA display CGI


Results 61 - 80 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 105342 0.66 0.777927
Target:  5'- uCCUGCGCCuGuCGCGCGUgaAGgccUC-CGACu -3'
miRNA:   3'- -GGACGUGGuC-GUGCGCG--UC---AGcGCUG- -5'
25508 3' -58.6 NC_005337.1 + 46013 0.66 0.768646
Target:  5'- uCCgGCACCGGCugaaacaugGCGaCGUcGUCGCG-Ca -3'
miRNA:   3'- -GGaCGUGGUCG---------UGC-GCGuCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 93780 0.66 0.749735
Target:  5'- uUCgauCGCCGG-ACGCGCuacgacguGGUCGCGGCu -3'
miRNA:   3'- -GGac-GUGGUCgUGCGCG--------UCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 104436 0.66 0.759246
Target:  5'- uCCUGCAgCaacacguggAGCACGCGCAGcacacacaguaCGCGGn -3'
miRNA:   3'- -GGACGUgG---------UCGUGCGCGUCa----------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 77637 0.66 0.78708
Target:  5'- aCCUugcGCGCCAGCGugcccgUGCGCgAGgucUCGCaGACg -3'
miRNA:   3'- -GGA---CGUGGUCGU------GCGCG-UC---AGCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 8861 0.66 0.768646
Target:  5'- cCCUGaCGCCgccgugcaugacGGCACGCaGCGuGUCG-GGCg -3'
miRNA:   3'- -GGAC-GUGG------------UCGUGCG-CGU-CAGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 12493 0.66 0.759246
Target:  5'- uCC-GCACCGGCGuccaGCaGCAGccgCGUGACc -3'
miRNA:   3'- -GGaCGUGGUCGUg---CG-CGUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 131159 0.66 0.749735
Target:  5'- --cGCgagGCCGGcCGCGguCGCGGUCGCGGa -3'
miRNA:   3'- ggaCG---UGGUC-GUGC--GCGUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 84162 0.66 0.777927
Target:  5'- --cGCGCCAGCGaGCGCccguGUUccaucaGCGACg -3'
miRNA:   3'- ggaCGUGGUCGUgCGCGu---CAG------CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 1323 0.66 0.777927
Target:  5'- -gUGCACguGCACGa--GGcCGCGGCg -3'
miRNA:   3'- ggACGUGguCGUGCgcgUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 37406 0.66 0.768646
Target:  5'- gCC-GCGCaucCGCGCGgAGUCGCGGa -3'
miRNA:   3'- -GGaCGUGgucGUGCGCgUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 82687 0.66 0.796095
Target:  5'- --aGCGCCAGCGCGagaaGCAGcUCcaaGACc -3'
miRNA:   3'- ggaCGUGGUCGUGCg---CGUC-AGcg-CUG- -5'
25508 3' -58.6 NC_005337.1 + 64317 0.66 0.759246
Target:  5'- uCUUGCGCguGCccaccACGCGgAG-CGUGGCg -3'
miRNA:   3'- -GGACGUGguCG-----UGCGCgUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 80608 0.66 0.796095
Target:  5'- cCUUGCgGCC-GCcgACGCGCuGcaUCGCGGCg -3'
miRNA:   3'- -GGACG-UGGuCG--UGCGCGuC--AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 116204 0.66 0.796095
Target:  5'- uCCUcUGCCAGCGCGUGUgcgcccAGuUUGCGAUg -3'
miRNA:   3'- -GGAcGUGGUCGUGCGCG------UC-AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 9126 0.66 0.759246
Target:  5'- uCCagGUACCGGUACaGCGCGcUCGCcGCu -3'
miRNA:   3'- -GGa-CGUGGUCGUG-CGCGUcAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 86784 0.66 0.796095
Target:  5'- uCC-GCACgGGCgGCG-GCAGguccCGCGACg -3'
miRNA:   3'- -GGaCGUGgUCG-UGCgCGUCa---GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 2176 0.66 0.796095
Target:  5'- aCgGCGCCGacgcGCACgGCGCAG--GCGGCg -3'
miRNA:   3'- gGaCGUGGU----CGUG-CGCGUCagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 84820 0.66 0.796095
Target:  5'- gCCaGCAacgCAGCAuCGCGCA--CGCGGCc -3'
miRNA:   3'- -GGaCGUg--GUCGU-GCGCGUcaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 51907 0.66 0.777927
Target:  5'- --gGCcCuCGGCGcCGUGCAGUCgGCGGCc -3'
miRNA:   3'- ggaCGuG-GUCGU-GCGCGUCAG-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.