miRNA display CGI


Results 81 - 100 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 6368 0.67 0.69085
Target:  5'- cCCaGCACCGgcucggcccGCACGCGC--UCGcCGGCg -3'
miRNA:   3'- -GGaCGUGGU---------CGUGCGCGucAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 132962 0.67 0.720628
Target:  5'- uCgUGCACguGCACcugGUGGUCGUGACc -3'
miRNA:   3'- -GgACGUGguCGUGcg-CGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 15468 0.67 0.700835
Target:  5'- gCUGgcCACCgacGGCGCGCGCGG-CaCGACg -3'
miRNA:   3'- gGAC--GUGG---UCGUGCGCGUCaGcGCUG- -5'
25508 3' -58.6 NC_005337.1 + 15002 0.67 0.700835
Target:  5'- gCUUGgugaGCCGGCGC-CGCAGUuuguucaugUGCGACa -3'
miRNA:   3'- -GGACg---UGGUCGUGcGCGUCA---------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 108970 0.67 0.691851
Target:  5'- --cGCGCCGGUcgACGCGCGGcccgcccgccgugcgCGCGAa -3'
miRNA:   3'- ggaCGUGGUCG--UGCGCGUCa--------------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 58893 0.67 0.739156
Target:  5'- aCgUGCACUucgugguGGCGCG-GCAGgacuccggCGCGGCg -3'
miRNA:   3'- -GgACGUGG-------UCGUGCgCGUCa-------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 118089 0.67 0.69085
Target:  5'- uCCUcgggGCucuCCGGCGCGUGguGgagcaaaCGCGGCg -3'
miRNA:   3'- -GGA----CGu--GGUCGUGCGCguCa------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 78334 0.67 0.69085
Target:  5'- gCUGCAgguCCAGCcgGgGCGCGGUCuCGAa -3'
miRNA:   3'- gGACGU---GGUCG--UgCGCGUCAGcGCUg -5'
25508 3' -58.6 NC_005337.1 + 88967 0.67 0.730417
Target:  5'- --gGCACCccgacGCugGCGaaaCAGUCuGCGACg -3'
miRNA:   3'- ggaCGUGGu----CGugCGC---GUCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 37005 0.67 0.730417
Target:  5'- --aGCACCAGCACGuCGaAG-CGcCGGCu -3'
miRNA:   3'- ggaCGUGGUCGUGC-GCgUCaGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 118795 0.67 0.729442
Target:  5'- --gGCGCCGucgugccGCGCGCGCcGUCgGUGGCc -3'
miRNA:   3'- ggaCGUGGU-------CGUGCGCGuCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 74922 0.67 0.730417
Target:  5'- gCUgGCgGCCuucGCGCGCGCGGcCGCG-Cg -3'
miRNA:   3'- gGA-CG-UGGu--CGUGCGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 22556 0.67 0.720628
Target:  5'- aCCUuCACCGcGgACGCGCGGUUcaGgGACg -3'
miRNA:   3'- -GGAcGUGGU-CgUGCGCGUCAG--CgCUG- -5'
25508 3' -58.6 NC_005337.1 + 2939 0.67 0.714718
Target:  5'- gCCgacGCGCaCGGCGCGCaugagcGCGGUCuccgccucgcacucgGCGACg -3'
miRNA:   3'- -GGa--CGUG-GUCGUGCG------CGUCAG---------------CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 3122 0.67 0.710765
Target:  5'- aCC-GCgGCCGGCcucgcguccaGCGCGCGGUCGauGCa -3'
miRNA:   3'- -GGaCG-UGGUCG----------UGCGCGUCAGCgcUG- -5'
25508 3' -58.6 NC_005337.1 + 123857 0.67 0.740122
Target:  5'- gCgUGCAUggaCGGCGgGCGCGG-CGCGuACg -3'
miRNA:   3'- -GgACGUG---GUCGUgCGCGUCaGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 118198 0.67 0.740122
Target:  5'- --cGCGCCGGUggGCGCGgAGcCGCccGACg -3'
miRNA:   3'- ggaCGUGGUCG--UGCGCgUCaGCG--CUG- -5'
25508 3' -58.6 NC_005337.1 + 132044 0.67 0.700835
Target:  5'- uCCUcGCGcgguuCCuGCGCGCGC--UCGCGGCc -3'
miRNA:   3'- -GGA-CGU-----GGuCGUGCGCGucAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 97008 0.67 0.700835
Target:  5'- cCCUGCACCuG-GCGUGCGGguuCGGCa -3'
miRNA:   3'- -GGACGUGGuCgUGCGCGUCagcGCUG- -5'
25508 3' -58.6 NC_005337.1 + 105765 0.67 0.720628
Target:  5'- gCCUGCcccacgcaguGCCGcGCGcCGCGCGccgCGCGGCc -3'
miRNA:   3'- -GGACG----------UGGU-CGU-GCGCGUca-GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.