miRNA display CGI


Results 101 - 120 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 41029 0.67 0.700835
Target:  5'- gCCcGcCACCAGCcgcucCGCGUuGUCGCGGa -3'
miRNA:   3'- -GGaC-GUGGUCGu----GCGCGuCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 15468 0.67 0.700835
Target:  5'- gCUGgcCACCgacGGCGCGCGCGG-CaCGACg -3'
miRNA:   3'- gGAC--GUGG---UCGUGCGCGUCaGcGCUG- -5'
25508 3' -58.6 NC_005337.1 + 40543 0.67 0.730417
Target:  5'- gCUUGCGCCGGCGgGuCGCuggaGGcCGCGuCg -3'
miRNA:   3'- -GGACGUGGUCGUgC-GCG----UCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 88967 0.67 0.730417
Target:  5'- --gGCACCccgacGCugGCGaaaCAGUCuGCGACg -3'
miRNA:   3'- ggaCGUGGu----CGugCGC---GUCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 37005 0.67 0.730417
Target:  5'- --aGCACCAGCACGuCGaAG-CGcCGGCu -3'
miRNA:   3'- ggaCGUGGUCGUGC-GCgUCaGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 108560 0.67 0.720628
Target:  5'- gCCUGaCGCUGGCG-GCGCGGcCG-GACa -3'
miRNA:   3'- -GGAC-GUGGUCGUgCGCGUCaGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 86498 0.67 0.720628
Target:  5'- --aGCACCccgcccucgaAGUACGCGUuggCGCGGCg -3'
miRNA:   3'- ggaCGUGG----------UCGUGCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 18996 0.67 0.717677
Target:  5'- gCUGCucgacgacgcguucGCCAGaGCGCGC-GUCGCG-Ca -3'
miRNA:   3'- gGACG--------------UGGUCgUGCGCGuCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 97653 0.67 0.710765
Target:  5'- gCUGCGCuCGGuCGCGCGCgcgcuccaGGcCGCGGg -3'
miRNA:   3'- gGACGUG-GUC-GUGCGCG--------UCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 105765 0.67 0.720628
Target:  5'- gCCUGCcccacgcaguGCCGcGCGcCGCGCGccgCGCGGCc -3'
miRNA:   3'- -GGACG----------UGGU-CGU-GCGCGUca-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 3643 0.67 0.730417
Target:  5'- uCCaGCGCC-GCGgccucgucgucCGCGCAGUCGgGGg -3'
miRNA:   3'- -GGaCGUGGuCGU-----------GCGCGUCAGCgCUg -5'
25508 3' -58.6 NC_005337.1 + 130898 0.67 0.734309
Target:  5'- gCUGCACCucauGGC-CGCGCacaccuccugcaagcGGUCGCuGAUc -3'
miRNA:   3'- gGACGUGG----UCGuGCGCG---------------UCAGCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 108970 0.67 0.691851
Target:  5'- --cGCGCCGGUcgACGCGCGGcccgcccgccgugcgCGCGAa -3'
miRNA:   3'- ggaCGUGGUCG--UGCGCGUCa--------------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 118089 0.67 0.69085
Target:  5'- uCCUcgggGCucuCCGGCGCGUGguGgagcaaaCGCGGCg -3'
miRNA:   3'- -GGA----CGu--GGUCGUGCGCguCa------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 6368 0.67 0.69085
Target:  5'- cCCaGCACCGgcucggcccGCACGCGC--UCGcCGGCg -3'
miRNA:   3'- -GGaCGUGGU---------CGUGCGCGucAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 78334 0.67 0.69085
Target:  5'- gCUGCAgguCCAGCcgGgGCGCGGUCuCGAa -3'
miRNA:   3'- gGACGU---GGUCG--UgCGCGUCAGcGCUg -5'
25508 3' -58.6 NC_005337.1 + 115159 0.67 0.740122
Target:  5'- aCCUGgagaUGCCGGCGCcCGCGGaCGcCGGCg -3'
miRNA:   3'- -GGAC----GUGGUCGUGcGCGUCaGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 95518 0.67 0.740122
Target:  5'- aCCgcGCACCGGCuCGCcaugaccaggucGCAGUgCGCGGu -3'
miRNA:   3'- -GGa-CGUGGUCGuGCG------------CGUCA-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 2996 0.67 0.743016
Target:  5'- gCCUGCGacuggcggacgggcuCCGGCagcgcguGCGCGCcgauGUgCGCGACc -3'
miRNA:   3'- -GGACGU---------------GGUCG-------UGCGCGu---CA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 58893 0.67 0.739156
Target:  5'- aCgUGCACUucgugguGGCGCG-GCAGgacuccggCGCGGCg -3'
miRNA:   3'- -GgACGUGG-------UCGUGCgCGUCa-------GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.