miRNA display CGI


Results 121 - 140 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 72799 0.67 0.69085
Target:  5'- --cGCGCCGGCAggaguacgaGCGcCGGuUCGCGGCc -3'
miRNA:   3'- ggaCGUGGUCGUg--------CGC-GUC-AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 11187 0.67 0.700835
Target:  5'- aCUGCGCgaAGUAcauCGUGCGGUgcaCGCGGCu -3'
miRNA:   3'- gGACGUGg-UCGU---GCGCGUCA---GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 542 0.67 0.704814
Target:  5'- gCUGCcggcgccacuccgccACCGGcCGCGCGUAcGcCGCGGCc -3'
miRNA:   3'- gGACG---------------UGGUC-GUGCGCGU-CaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 3776 0.67 0.700835
Target:  5'- aCCUccCACgAGCAgGCGCugaAGUCGCGGu -3'
miRNA:   3'- -GGAc-GUGgUCGUgCGCG---UCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 41029 0.67 0.700835
Target:  5'- gCCcGcCACCAGCcgcucCGCGUuGUCGCGGa -3'
miRNA:   3'- -GGaC-GUGGUCGu----GCGCGuCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 15468 0.67 0.700835
Target:  5'- gCUGgcCACCgacGGCGCGCGCGG-CaCGACg -3'
miRNA:   3'- gGAC--GUGG---UCGUGCGCGUCaGcGCUG- -5'
25508 3' -58.6 NC_005337.1 + 108970 0.67 0.691851
Target:  5'- --cGCGCCGGUcgACGCGCGGcccgcccgccgugcgCGCGAa -3'
miRNA:   3'- ggaCGUGGUCG--UGCGCGUCa--------------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 118089 0.67 0.69085
Target:  5'- uCCUcgggGCucuCCGGCGCGUGguGgagcaaaCGCGGCg -3'
miRNA:   3'- -GGA----CGu--GGUCGUGCGCguCa------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 6368 0.67 0.69085
Target:  5'- cCCaGCACCGgcucggcccGCACGCGC--UCGcCGGCg -3'
miRNA:   3'- -GGaCGUGGU---------CGUGCGCGucAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 78334 0.67 0.69085
Target:  5'- gCUGCAgguCCAGCcgGgGCGCGGUCuCGAa -3'
miRNA:   3'- gGACGU---GGUCG--UgCGCGUCAGcGCUg -5'
25508 3' -58.6 NC_005337.1 + 121208 0.67 0.69085
Target:  5'- uCC-GCGCC--CGCGCGCAG-CaGCGACa -3'
miRNA:   3'- -GGaCGUGGucGUGCGCGUCaG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 58893 0.67 0.739156
Target:  5'- aCgUGCACUucgugguGGCGCG-GCAGgacuccggCGCGGCg -3'
miRNA:   3'- -GgACGUGG-------UCGUGCgCGUCa-------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 24049 0.67 0.710765
Target:  5'- gCUGUGCUcGgGCGaCGCGGcCGCGGCc -3'
miRNA:   3'- gGACGUGGuCgUGC-GCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 105765 0.67 0.720628
Target:  5'- gCCUGCcccacgcaguGCCGcGCGcCGCGCGccgCGCGGCc -3'
miRNA:   3'- -GGACG----------UGGU-CGU-GCGCGUca-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 118795 0.67 0.729442
Target:  5'- --gGCGCCGucgugccGCGCGCGCcGUCgGUGGCc -3'
miRNA:   3'- ggaCGUGGU-------CGUGCGCGuCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 40543 0.67 0.730417
Target:  5'- gCUUGCGCCGGCGgGuCGCuggaGGcCGCGuCg -3'
miRNA:   3'- -GGACGUGGUCGUgC-GCG----UCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 18996 0.67 0.717677
Target:  5'- gCUGCucgacgacgcguucGCCAGaGCGCGC-GUCGCG-Ca -3'
miRNA:   3'- gGACG--------------UGGUCgUGCGCGuCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 37005 0.67 0.730417
Target:  5'- --aGCACCAGCACGuCGaAG-CGcCGGCu -3'
miRNA:   3'- ggaCGUGGUCGUGC-GCgUCaGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 3643 0.67 0.730417
Target:  5'- uCCaGCGCC-GCGgccucgucgucCGCGCAGUCGgGGg -3'
miRNA:   3'- -GGaCGUGGuCGU-----------GCGCGUCAGCgCUg -5'
25508 3' -58.6 NC_005337.1 + 68162 0.67 0.69085
Target:  5'- aCUUGaacuCCAcGCGCGCGCAGaCGCcGCa -3'
miRNA:   3'- -GGACgu--GGU-CGUGCGCGUCaGCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.