miRNA display CGI


Results 141 - 160 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 65549 0.68 0.670742
Target:  5'- aCUGUGCgCAGCACGgGC-GUCuCGGCc -3'
miRNA:   3'- gGACGUG-GUCGUGCgCGuCAGcGCUG- -5'
25508 3' -58.6 NC_005337.1 + 39521 0.68 0.630222
Target:  5'- aCCgcGgGCCAGCu--CGCGGUCGUGGCu -3'
miRNA:   3'- -GGa-CgUGGUCGugcGCGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 29785 0.68 0.630222
Target:  5'- -gUGCGCgAGCGCGUaGCAGcgccgCGCGAa -3'
miRNA:   3'- ggACGUGgUCGUGCG-CGUCa----GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 10229 0.68 0.650511
Target:  5'- --aGCuCCAGC-CGCgGCAGgcgCGCGGCc -3'
miRNA:   3'- ggaCGuGGUCGuGCG-CGUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 8241 0.68 0.634282
Target:  5'- aCCgGCGCgCAugagacacacGCACGCGCGGggguugaacgcggcCGCGACg -3'
miRNA:   3'- -GGaCGUG-GU----------CGUGCGCGUCa-------------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 36479 0.68 0.680816
Target:  5'- aCCUGcCGCaCGGCcuugGC-CGCGGcCGCGGCg -3'
miRNA:   3'- -GGAC-GUG-GUCG----UGcGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 100263 0.68 0.680816
Target:  5'- aCCgggaGCACCuaccGCGCGCGCaAGagGCGGu -3'
miRNA:   3'- -GGa---CGUGGu---CGUGCGCG-UCagCGCUg -5'
25508 3' -58.6 NC_005337.1 + 118265 0.68 0.670742
Target:  5'- aCCUGCcgGCC-GCGCGUacggucucGCAGcUGCGACu -3'
miRNA:   3'- -GGACG--UGGuCGUGCG--------CGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 62948 0.68 0.670742
Target:  5'- -gUGCACCGccGC-CGCGCGgGUCGCcgccGACg -3'
miRNA:   3'- ggACGUGGU--CGuGCGCGU-CAGCG----CUG- -5'
25508 3' -58.6 NC_005337.1 + 59721 0.68 0.670742
Target:  5'- --cGCgGCCAGCaucACGCGCcG-CGCGGCg -3'
miRNA:   3'- ggaCG-UGGUCG---UGCGCGuCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 85865 0.68 0.670742
Target:  5'- --aGCGCCAGUACGCcgaGCGucuccGUgCGCGGCu -3'
miRNA:   3'- ggaCGUGGUCGUGCG---CGU-----CA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 43064 0.68 0.670742
Target:  5'- gCUGacCACCGGCgGCGCGCccguccgcaUCGCGGCg -3'
miRNA:   3'- gGAC--GUGGUCG-UGCGCGuc-------AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 62613 0.68 0.660638
Target:  5'- gCCgUGCACCcGCGCGUugaAGUgCGCGGCc -3'
miRNA:   3'- -GG-ACGUGGuCGUGCGcg-UCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 73331 0.68 0.650511
Target:  5'- cCCaUGCgcauGCCGGCGCG-GCAGUgGCG-Cg -3'
miRNA:   3'- -GG-ACG----UGGUCGUGCgCGUCAgCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 8551 0.68 0.670742
Target:  5'- gCCUcUACgAGCGUGCGCAGUaCGuCGACg -3'
miRNA:   3'- -GGAcGUGgUCGUGCGCGUCA-GC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 30241 0.68 0.670742
Target:  5'- cUCUGUGCgGGuCAgGCGCAGgCGCGGg -3'
miRNA:   3'- -GGACGUGgUC-GUgCGCGUCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 74573 0.68 0.670742
Target:  5'- gCCgcgcgGCACgCGG-ACGCGCuGUCGCG-Ca -3'
miRNA:   3'- -GGa----CGUG-GUCgUGCGCGuCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 117094 0.68 0.670742
Target:  5'- aCCgcGCGCCcuGCugGCGCuGUCgGUGAUa -3'
miRNA:   3'- -GGa-CGUGGu-CGugCGCGuCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 131350 0.68 0.674776
Target:  5'- -gUGCACUuuuucgagcacgagaAGCGCGCGCGGUacgucuucgacCGCGGg -3'
miRNA:   3'- ggACGUGG---------------UCGUGCGCGUCA-----------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 80144 0.68 0.680816
Target:  5'- gCCaUGCGCgCGGCGCG-GCcGUCGCG-Cu -3'
miRNA:   3'- -GG-ACGUG-GUCGUGCgCGuCAGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.