miRNA display CGI


Results 61 - 80 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 38480 0.72 0.454198
Target:  5'- --cGCGCCgGGCGCGCGC-GUCGCcGAg -3'
miRNA:   3'- ggaCGUGG-UCGUGCGCGuCAGCG-CUg -5'
25508 3' -58.6 NC_005337.1 + 6627 0.72 0.455111
Target:  5'- --gGCGCCGGCACGcCGCAGgguugaagaccgccgCGCGGu -3'
miRNA:   3'- ggaCGUGGUCGUGC-GCGUCa--------------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 23919 0.72 0.445132
Target:  5'- --cGCGCCcGCGCGCccgcgGCAGgcgcgCGCGACg -3'
miRNA:   3'- ggaCGUGGuCGUGCG-----CGUCa----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 115350 0.72 0.427308
Target:  5'- gCCUGCugUucgGGUACGCGCucaAGccCGCGACg -3'
miRNA:   3'- -GGACGugG---UCGUGCGCG---UCa-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 115499 0.72 0.427308
Target:  5'- -gUGCGCCGGCcuCGCGaGGUCGaCGACc -3'
miRNA:   3'- ggACGUGGUCGu-GCGCgUCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 97779 0.72 0.427308
Target:  5'- --cGCGCCgAGCGC-CGCGGcCGCGGCc -3'
miRNA:   3'- ggaCGUGG-UCGUGcGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 64364 0.72 0.442432
Target:  5'- gCCgUGU-CCAGCGCGCGCAGgagcacguugucggaGCGGCg -3'
miRNA:   3'- -GG-ACGuGGUCGUGCGCGUCag-------------CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 90937 0.72 0.409056
Target:  5'- cCCgGCgGCCAGCGCGUcggcgagccccgaGCAGUaCGUGACg -3'
miRNA:   3'- -GGaCG-UGGUCGUGCG-------------CGUCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 108921 0.72 0.454198
Target:  5'- --gGCACCAGCgagACGCGC---CGCGACg -3'
miRNA:   3'- ggaCGUGGUCG---UGCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 87808 0.72 0.457853
Target:  5'- gCUGC-CCGGgagcucgcggcgcgcCGCGCGCAGaUCGCGAa -3'
miRNA:   3'- gGACGuGGUC---------------GUGCGCGUC-AGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 64008 0.72 0.445132
Target:  5'- gCCgcgGCuuCCGGCacaGCGCGCAGcgCGUGGCg -3'
miRNA:   3'- -GGa--CGu-GGUCG---UGCGCGUCa-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 28489 0.72 0.427308
Target:  5'- -aUGCgGCCGcGCgGCGCGCGGUCGCGcgGCa -3'
miRNA:   3'- ggACG-UGGU-CG-UGCGCGUCAGCGC--UG- -5'
25508 3' -58.6 NC_005337.1 + 104481 0.72 0.454198
Target:  5'- --aGCACgCggAGCACGCGCAG-CgGCGACa -3'
miRNA:   3'- ggaCGUG-G--UCGUGCGCGUCaG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 91533 0.72 0.445132
Target:  5'- aCCcGCACC-GCACGCuCGG-CGCGGCc -3'
miRNA:   3'- -GGaCGUGGuCGUGCGcGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 115556 0.71 0.472626
Target:  5'- --gGCGCCAGCGCGCcGCAGcuccUCGCcggGGCc -3'
miRNA:   3'- ggaCGUGGUCGUGCG-CGUC----AGCG---CUG- -5'
25508 3' -58.6 NC_005337.1 + 52723 0.71 0.48198
Target:  5'- aCCUGCGCgAGCuGCGCGCcgagcugaAGcgCGCGAa -3'
miRNA:   3'- -GGACGUGgUCG-UGCGCG--------UCa-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 33390 0.71 0.463364
Target:  5'- cCCUGCACCGGCugcuccAUGCGC-GUCauCGGCa -3'
miRNA:   3'- -GGACGUGGUCG------UGCGCGuCAGc-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 119848 0.71 0.48198
Target:  5'- cCCgGCGCCAGCgGCG-GCAcGUCGCGcgGCa -3'
miRNA:   3'- -GGaCGUGGUCG-UGCgCGU-CAGCGC--UG- -5'
25508 3' -58.6 NC_005337.1 + 105327 0.71 0.50095
Target:  5'- gUUGC-CCAGCACGUGCGGcggCGgGAg -3'
miRNA:   3'- gGACGuGGUCGUGCGCGUCa--GCgCUg -5'
25508 3' -58.6 NC_005337.1 + 16916 0.71 0.463364
Target:  5'- uUCUGgACCAGCACGgGCucGUCGaggaaGACc -3'
miRNA:   3'- -GGACgUGGUCGUGCgCGu-CAGCg----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.