miRNA display CGI


Results 81 - 100 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 115556 0.71 0.472626
Target:  5'- --gGCGCCAGCGCGCcGCAGcuccUCGCcggGGCc -3'
miRNA:   3'- ggaCGUGGUCGUGCG-CGUC----AGCG---CUG- -5'
25508 3' -58.6 NC_005337.1 + 29050 0.71 0.463364
Target:  5'- gCCggGCGCCcGCgaGCGCGCAGcUCaGCGGCc -3'
miRNA:   3'- -GGa-CGUGGuCG--UGCGCGUC-AG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 33390 0.71 0.463364
Target:  5'- cCCUGCACCGGCugcuccAUGCGC-GUCauCGGCa -3'
miRNA:   3'- -GGACGUGGUCG------UGCGCGuCAGc-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 16916 0.71 0.463364
Target:  5'- uUCUGgACCAGCACGgGCucGUCGaggaaGACc -3'
miRNA:   3'- -GGACgUGGUCGUGCgCGu-CAGCg----CUG- -5'
25508 3' -58.6 NC_005337.1 + 85977 0.71 0.472626
Target:  5'- --cGCACC-GCAUGCGgAGgCGCGACc -3'
miRNA:   3'- ggaCGUGGuCGUGCGCgUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 52691 0.71 0.471695
Target:  5'- aCUGCACCAuccugguGUACGCGCAGgaguaCGACc -3'
miRNA:   3'- gGACGUGGU-------CGUGCGCGUCagc--GCUG- -5'
25508 3' -58.6 NC_005337.1 + 104952 0.71 0.463364
Target:  5'- gCCUGCugcucaccgacuACCGGCACGUgaGCGG-CGUGAUg -3'
miRNA:   3'- -GGACG------------UGGUCGUGCG--CGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 92077 0.71 0.463364
Target:  5'- gCUGUACCGGCagcggcuggACGCGCAGcuggaCGCGGu -3'
miRNA:   3'- gGACGUGGUCG---------UGCGCGUCa----GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 53589 0.71 0.463364
Target:  5'- uCCUcGCGCaCAuGCGCGCGCGGaagCGCGcCg -3'
miRNA:   3'- -GGA-CGUG-GU-CGUGCGCGUCa--GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 52723 0.71 0.48198
Target:  5'- aCCUGCGCgAGCuGCGCGCcgagcugaAGcgCGCGAa -3'
miRNA:   3'- -GGACGUGgUCG-UGCGCG--------UCa-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 93802 0.7 0.510558
Target:  5'- -gUGCGUCAGCAgcUGCGCAGcUGCGGCg -3'
miRNA:   3'- ggACGUGGUCGU--GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 73536 0.7 0.559638
Target:  5'- --gGCACUcgAGUAcaucCGCGCGGUCGuCGACg -3'
miRNA:   3'- ggaCGUGG--UCGU----GCGCGUCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 87618 0.7 0.558641
Target:  5'- gCUGCGCgAuCGCGCGCAGccccgacUCGCGGa -3'
miRNA:   3'- gGACGUGgUcGUGCGCGUC-------AGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 77888 0.7 0.5497
Target:  5'- gCCgaagagGCugCAGUacACGCGCAG-CGCGuGCa -3'
miRNA:   3'- -GGa-----CGugGUCG--UGCGCGUCaGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 26399 0.7 0.5497
Target:  5'- aCUGCGgCAGCagguACGUGC--UCGCGGCg -3'
miRNA:   3'- gGACGUgGUCG----UGCGCGucAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 131145 0.7 0.5497
Target:  5'- gCUGUACCGGCGCGUGCuGcacaCGCuGCu -3'
miRNA:   3'- gGACGUGGUCGUGCGCGuCa---GCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 4106 0.7 0.539818
Target:  5'- uCCU-CACC-GCGCGCGCGGagacgCGCgGACa -3'
miRNA:   3'- -GGAcGUGGuCGUGCGCGUCa----GCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 98878 0.7 0.529997
Target:  5'- aCC-GCGCC-GCGCGCGCGGacugCGCG-Cu -3'
miRNA:   3'- -GGaCGUGGuCGUGCGCGUCa---GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 128687 0.7 0.529997
Target:  5'- cCCcGC-CgGGCACGCGCGcUgGCGACg -3'
miRNA:   3'- -GGaCGuGgUCGUGCGCGUcAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 80671 0.7 0.5497
Target:  5'- aUCUGCGCgGcgcgcuuccGCGCGCGCAuGUgCGCGAg -3'
miRNA:   3'- -GGACGUGgU---------CGUGCGCGU-CA-GCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.