miRNA display CGI


Results 101 - 120 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 59786 0.7 0.538833
Target:  5'- gCCgGCGCCGGCACGCGaccacgaggccguCGGUgGUGGu -3'
miRNA:   3'- -GGaCGUGGUCGUGCGC-------------GUCAgCGCUg -5'
25508 3' -58.6 NC_005337.1 + 25105 0.7 0.539818
Target:  5'- gCCcGCGCggcgCGGCGCGCGCGGacgCGUGAa -3'
miRNA:   3'- -GGaCGUG----GUCGUGCGCGUCa--GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 56887 0.7 0.520242
Target:  5'- cCCgcgGCGCCGGCugGUGU---UGCGGCa -3'
miRNA:   3'- -GGa--CGUGGUCGugCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 102924 0.7 0.559638
Target:  5'- uCCUGCgACCAcaagcugguGCugGUGCAGU-GCGAg -3'
miRNA:   3'- -GGACG-UGGU---------CGugCGCGUCAgCGCUg -5'
25508 3' -58.6 NC_005337.1 + 59333 0.7 0.559638
Target:  5'- cCCaGCACC-GCAucCGCGCGGcCGCGcGCg -3'
miRNA:   3'- -GGaCGUGGuCGU--GCGCGUCaGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 123610 0.7 0.529997
Target:  5'- aCCcGcCGCCGGCcgGCGCGCGGUCcauaGACg -3'
miRNA:   3'- -GGaC-GUGGUCG--UGCGCGUCAGcg--CUG- -5'
25508 3' -58.6 NC_005337.1 + 73536 0.7 0.559638
Target:  5'- --gGCACUcgAGUAcaucCGCGCGGUCGuCGACg -3'
miRNA:   3'- ggaCGUGG--UCGU----GCGCGUCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 26399 0.7 0.5497
Target:  5'- aCUGCGgCAGCagguACGUGC--UCGCGGCg -3'
miRNA:   3'- gGACGUgGUCG----UGCGCGucAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 55223 0.7 0.520242
Target:  5'- uCCUGguCuuCAGCACGCGCAagaacuccGUCGUGuACa -3'
miRNA:   3'- -GGACguG--GUCGUGCGCGU--------CAGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 58820 0.7 0.520242
Target:  5'- gCUGCGCCAGaucgucggGCGCGCcGU-GCGGCu -3'
miRNA:   3'- gGACGUGGUCg-------UGCGCGuCAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 36637 0.7 0.520242
Target:  5'- --aGCACCAGCACGCGUcuggacgucccGUcCGCGAa -3'
miRNA:   3'- ggaCGUGGUCGUGCGCGu----------CA-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 77888 0.7 0.5497
Target:  5'- gCCgaagagGCugCAGUacACGCGCAG-CGCGuGCa -3'
miRNA:   3'- -GGa-----CGugGUCG--UGCGCGUCaGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 103237 0.7 0.539818
Target:  5'- aCCUGcCGCUGGUGCGCGCccgCGCGGu -3'
miRNA:   3'- -GGAC-GUGGUCGUGCGCGucaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 80671 0.7 0.5497
Target:  5'- aUCUGCGCgGcgcgcuuccGCGCGCGCAuGUgCGCGAg -3'
miRNA:   3'- -GGACGUGgU---------CGUGCGCGU-CA-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 87618 0.7 0.558641
Target:  5'- gCUGCGCgAuCGCGCGCAGccccgacUCGCGGa -3'
miRNA:   3'- gGACGUGgUcGUGCGCGUC-------AGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 43833 0.69 0.598808
Target:  5'- gCUGCagcggGCCGGCG-GCGCGGUggagaucguguacUGCGACg -3'
miRNA:   3'- gGACG-----UGGUCGUgCGCGUCA-------------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 40614 0.69 0.609939
Target:  5'- -aUGUACUGGUACGcCGCGGccggcCGCGACu -3'
miRNA:   3'- ggACGUGGUCGUGC-GCGUCa----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 104239 0.69 0.603865
Target:  5'- --cGCACCAGCcagaagggcacgguCGCGUAcGUCGcCGACg -3'
miRNA:   3'- ggaCGUGGUCGu-------------GCGCGU-CAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 132585 0.69 0.608927
Target:  5'- gCUGUugCGacGCGCGCuGCGGcugcgguucagguUCGCGACg -3'
miRNA:   3'- gGACGugGU--CGUGCG-CGUC-------------AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 69943 0.69 0.603865
Target:  5'- gCCgcgGCGCCacgcuccgcguggugGGCACGCGCaagacgccGGaCGCGACc -3'
miRNA:   3'- -GGa--CGUGG---------------UCGUGCGCG--------UCaGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.