miRNA display CGI


Results 121 - 140 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 21184 0.69 0.579655
Target:  5'- --cGgACCuGCGCGCGCAGgucCGCGuACu -3'
miRNA:   3'- ggaCgUGGuCGUGCGCGUCa--GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 114373 0.69 0.569624
Target:  5'- aCCUGguCCAGCACGCGgAcuaCGCG-Cu -3'
miRNA:   3'- -GGACguGGUCGUGCGCgUca-GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 36039 0.69 0.569624
Target:  5'- aCUGCccgACguGCucguCGUGcCAGUCGCGGCu -3'
miRNA:   3'- gGACG---UGguCGu---GCGC-GUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 18268 0.69 0.588713
Target:  5'- aCCUGCucggugaGCC-GCACGCcCAG-CGCGAUg -3'
miRNA:   3'- -GGACG-------UGGuCGUGCGcGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 96816 0.69 0.579655
Target:  5'- gUCUGUucucggACCuGCGggUGCGCAGcCGCGGCg -3'
miRNA:   3'- -GGACG------UGGuCGU--GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 43833 0.69 0.598808
Target:  5'- gCUGCagcggGCCGGCG-GCGCGGUggagaucguguacUGCGACg -3'
miRNA:   3'- gGACG-----UGGUCGUgCGCGUCA-------------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 69943 0.69 0.603865
Target:  5'- gCCgcgGCGCCacgcuccgcguggugGGCACGCGCaagacgccGGaCGCGACc -3'
miRNA:   3'- -GGa--CGUGG---------------UCGUGCGCG--------UCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 104239 0.69 0.603865
Target:  5'- --cGCACCAGCcagaagggcacgguCGCGUAcGUCGcCGACg -3'
miRNA:   3'- ggaCGUGGUCGu-------------GCGCGU-CAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 132585 0.69 0.608927
Target:  5'- gCUGUugCGacGCGCGCuGCGGcugcgguucagguUCGCGACg -3'
miRNA:   3'- gGACGugGU--CGUGCG-CGUC-------------AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 40614 0.69 0.609939
Target:  5'- -aUGUACUGGUACGcCGCGGccggcCGCGACu -3'
miRNA:   3'- ggACGUGGUCGUGC-GCGUCa----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 50377 0.69 0.609939
Target:  5'- cCCggGCACgGGCGCcugGCGCGGgggCGCGcCg -3'
miRNA:   3'- -GGa-CGUGgUCGUG---CGCGUCa--GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 78711 0.69 0.598808
Target:  5'- uCgUGUACCcgagcgaGGCGCGCGCGGUgGaCGAg -3'
miRNA:   3'- -GgACGUGG-------UCGUGCGCGUCAgC-GCUg -5'
25508 3' -58.6 NC_005337.1 + 38230 0.69 0.569624
Target:  5'- aCCUGUucuucGCCgaguagGGCGgGCGCGGaucauuUCGCGACg -3'
miRNA:   3'- -GGACG-----UGG------UCGUgCGCGUC------AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 132716 0.69 0.569624
Target:  5'- gCC-GCGCCAuGCGCGCgguaucaaGCGGUCGCcGCc -3'
miRNA:   3'- -GGaCGUGGU-CGUGCG--------CGUCAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 87962 0.69 0.579655
Target:  5'- uCCUGCGCCuGCACgggGCGCuGcUGCGGu -3'
miRNA:   3'- -GGACGUGGuCGUG---CGCGuCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 75620 0.69 0.579655
Target:  5'- --aGCGCCgAGgACGCGCGggccGUCGUGAUg -3'
miRNA:   3'- ggaCGUGG-UCgUGCGCGU----CAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 67100 0.69 0.586698
Target:  5'- cCCgGCGCCgugAGCuCGCGCagguugcgcaucacGGUCGCGAa -3'
miRNA:   3'- -GGaCGUGG---UCGuGCGCG--------------UCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 34890 0.69 0.589721
Target:  5'- --aGCACCGGCAgGUGguGcCGCG-Cg -3'
miRNA:   3'- ggaCGUGGUCGUgCGCguCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 36481 0.69 0.593757
Target:  5'- aCCgugGaCACCAGCAcgaagcgguccuucuCGCGCAG-CGCGcGCg -3'
miRNA:   3'- -GGa--C-GUGGUCGU---------------GCGCGUCaGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 1517 0.69 0.586698
Target:  5'- --cGCGCCAGCGCGUccgccacuucguguGCGGgcgGCGACc -3'
miRNA:   3'- ggaCGUGGUCGUGCG--------------CGUCag-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.