miRNA display CGI


Results 81 - 100 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 104952 0.71 0.463364
Target:  5'- gCCUGCugcucaccgacuACCGGCACGUgaGCGG-CGUGAUg -3'
miRNA:   3'- -GGACG------------UGGUCGUGCG--CGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 52691 0.71 0.471695
Target:  5'- aCUGCACCAuccugguGUACGCGCAGgaguaCGACc -3'
miRNA:   3'- gGACGUGGU-------CGUGCGCGUCagc--GCUG- -5'
25508 3' -58.6 NC_005337.1 + 115556 0.71 0.472626
Target:  5'- --gGCGCCAGCGCGCcGCAGcuccUCGCcggGGCc -3'
miRNA:   3'- ggaCGUGGUCGUGCG-CGUC----AGCG---CUG- -5'
25508 3' -58.6 NC_005337.1 + 85977 0.71 0.472626
Target:  5'- --cGCACC-GCAUGCGgAGgCGCGACc -3'
miRNA:   3'- ggaCGUGGuCGUGCGCgUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 114129 0.71 0.472626
Target:  5'- gCCUGCGgCAGCguggaGCGCGCcuUCGcCGACc -3'
miRNA:   3'- -GGACGUgGUCG-----UGCGCGucAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 52723 0.71 0.48198
Target:  5'- aCCUGCGCgAGCuGCGCGCcgagcugaAGcgCGCGAa -3'
miRNA:   3'- -GGACGUGgUCG-UGCGCG--------UCa-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 119848 0.71 0.48198
Target:  5'- cCCgGCGCCAGCgGCG-GCAcGUCGCGcgGCa -3'
miRNA:   3'- -GGaCGUGGUCG-UGCgCGU-CAGCGC--UG- -5'
25508 3' -58.6 NC_005337.1 + 4595 0.71 0.48198
Target:  5'- aCUGCGCguGCugGUGCAGgagCGUGu- -3'
miRNA:   3'- gGACGUGguCGugCGCGUCa--GCGCug -5'
25508 3' -58.6 NC_005337.1 + 105327 0.71 0.50095
Target:  5'- gUUGC-CCAGCACGUGCGGcggCGgGAg -3'
miRNA:   3'- gGACGuGGUCGUGCGCGUCa--GCgCUg -5'
25508 3' -58.6 NC_005337.1 + 80571 0.71 0.50095
Target:  5'- uCCgUGU-CCAGCAUGCGCGGcagcuucagCGCGGCc -3'
miRNA:   3'- -GG-ACGuGGUCGUGCGCGUCa--------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 52163 0.7 0.510558
Target:  5'- -aUGCGCCAGCgcggcuucgacgGCGCGCAGaCGgcCGACc -3'
miRNA:   3'- ggACGUGGUCG------------UGCGCGUCaGC--GCUG- -5'
25508 3' -58.6 NC_005337.1 + 93802 0.7 0.510558
Target:  5'- -gUGCGUCAGCAgcUGCGCAGcUGCGGCg -3'
miRNA:   3'- ggACGUGGUCGU--GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 58820 0.7 0.520242
Target:  5'- gCUGCGCCAGaucgucggGCGCGCcGU-GCGGCu -3'
miRNA:   3'- gGACGUGGUCg-------UGCGCGuCAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 12921 0.7 0.520242
Target:  5'- cCCgUGCGCCgaguGGCugGUGCGG-CGCGuCa -3'
miRNA:   3'- -GG-ACGUGG----UCGugCGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 56887 0.7 0.520242
Target:  5'- cCCgcgGCGCCGGCugGUGU---UGCGGCa -3'
miRNA:   3'- -GGa--CGUGGUCGugCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 55223 0.7 0.520242
Target:  5'- uCCUGguCuuCAGCACGCGCAagaacuccGUCGUGuACa -3'
miRNA:   3'- -GGACguG--GUCGUGCGCGU--------CAGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 36637 0.7 0.520242
Target:  5'- --aGCACCAGCACGCGUcuggacgucccGUcCGCGAa -3'
miRNA:   3'- ggaCGUGGUCGUGCGCGu----------CA-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 98878 0.7 0.529997
Target:  5'- aCC-GCGCC-GCGCGCGCGGacugCGCG-Cu -3'
miRNA:   3'- -GGaCGUGGuCGUGCGCGUCa---GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 123610 0.7 0.529997
Target:  5'- aCCcGcCGCCGGCcgGCGCGCGGUCcauaGACg -3'
miRNA:   3'- -GGaC-GUGGUCG--UGCGCGUCAGcg--CUG- -5'
25508 3' -58.6 NC_005337.1 + 128687 0.7 0.529997
Target:  5'- cCCcGC-CgGGCACGCGCGcUgGCGACg -3'
miRNA:   3'- -GGaCGuGgUCGUGCGCGUcAgCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.