miRNA display CGI


Results 101 - 120 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 59786 0.7 0.538833
Target:  5'- gCCgGCGCCGGCACGCGaccacgaggccguCGGUgGUGGu -3'
miRNA:   3'- -GGaCGUGGUCGUGCGC-------------GUCAgCGCUg -5'
25508 3' -58.6 NC_005337.1 + 103237 0.7 0.539818
Target:  5'- aCCUGcCGCUGGUGCGCGCccgCGCGGu -3'
miRNA:   3'- -GGAC-GUGGUCGUGCGCGucaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 4106 0.7 0.539818
Target:  5'- uCCU-CACC-GCGCGCGCGGagacgCGCgGACa -3'
miRNA:   3'- -GGAcGUGGuCGUGCGCGUCa----GCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 25105 0.7 0.539818
Target:  5'- gCCcGCGCggcgCGGCGCGCGCGGacgCGUGAa -3'
miRNA:   3'- -GGaCGUG----GUCGUGCGCGUCa--GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 52507 0.7 0.5497
Target:  5'- gCCaUGCGCaaccuGCACGCGCAGgagaacggCGcCGGCg -3'
miRNA:   3'- -GG-ACGUGgu---CGUGCGCGUCa-------GC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 131145 0.7 0.5497
Target:  5'- gCUGUACCGGCGCGUGCuGcacaCGCuGCu -3'
miRNA:   3'- gGACGUGGUCGUGCGCGuCa---GCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 26399 0.7 0.5497
Target:  5'- aCUGCGgCAGCagguACGUGC--UCGCGGCg -3'
miRNA:   3'- gGACGUgGUCG----UGCGCGucAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 77888 0.7 0.5497
Target:  5'- gCCgaagagGCugCAGUacACGCGCAG-CGCGuGCa -3'
miRNA:   3'- -GGa-----CGugGUCG--UGCGCGUCaGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 80671 0.7 0.5497
Target:  5'- aUCUGCGCgGcgcgcuuccGCGCGCGCAuGUgCGCGAg -3'
miRNA:   3'- -GGACGUGgU---------CGUGCGCGU-CA-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 87618 0.7 0.558641
Target:  5'- gCUGCGCgAuCGCGCGCAGccccgacUCGCGGa -3'
miRNA:   3'- gGACGUGgUcGUGCGCGUC-------AGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 102924 0.7 0.559638
Target:  5'- uCCUGCgACCAcaagcugguGCugGUGCAGU-GCGAg -3'
miRNA:   3'- -GGACG-UGGU---------CGugCGCGUCAgCGCUg -5'
25508 3' -58.6 NC_005337.1 + 59333 0.7 0.559638
Target:  5'- cCCaGCACC-GCAucCGCGCGGcCGCGcGCg -3'
miRNA:   3'- -GGaCGUGGuCGU--GCGCGUCaGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 73536 0.7 0.559638
Target:  5'- --gGCACUcgAGUAcaucCGCGCGGUCGuCGACg -3'
miRNA:   3'- ggaCGUGG--UCGU----GCGCGUCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 105038 0.7 0.559638
Target:  5'- uUCUGCgACCGGCAgGCGacgccCGGccgCGCGGCg -3'
miRNA:   3'- -GGACG-UGGUCGUgCGC-----GUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 13433 0.7 0.563627
Target:  5'- --aGCGCCAGCACcggggccucuggguaGCaGCAGUCGCa-- -3'
miRNA:   3'- ggaCGUGGUCGUG---------------CG-CGUCAGCGcug -5'
25508 3' -58.6 NC_005337.1 + 132716 0.69 0.569624
Target:  5'- gCC-GCGCCAuGCGCGCgguaucaaGCGGUCGCcGCc -3'
miRNA:   3'- -GGaCGUGGU-CGUGCG--------CGUCAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 38230 0.69 0.569624
Target:  5'- aCCUGUucuucGCCgaguagGGCGgGCGCGGaucauuUCGCGACg -3'
miRNA:   3'- -GGACG-----UGG------UCGUgCGCGUC------AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 36039 0.69 0.569624
Target:  5'- aCUGCccgACguGCucguCGUGcCAGUCGCGGCu -3'
miRNA:   3'- gGACG---UGguCGu---GCGC-GUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 114373 0.69 0.569624
Target:  5'- aCCUGguCCAGCACGCGgAcuaCGCG-Cu -3'
miRNA:   3'- -GGACguGGUCGUGCGCgUca-GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 21184 0.69 0.579655
Target:  5'- --cGgACCuGCGCGCGCAGgucCGCGuACu -3'
miRNA:   3'- ggaCgUGGuCGUGCGCGUCa--GCGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.