miRNA display CGI


Results 61 - 80 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 37406 0.66 0.768646
Target:  5'- gCC-GCGCaucCGCGCGgAGUCGCGGa -3'
miRNA:   3'- -GGaCGUGgucGUGCGCgUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 5986 0.66 0.768646
Target:  5'- --cGgGCCAgGCGCGCGC-GUUGCaGACc -3'
miRNA:   3'- ggaCgUGGU-CGUGCGCGuCAGCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 38296 0.66 0.768646
Target:  5'- --aGCACCGGUggagggGCGCGCGcGUCGagcgcaacgacCGACg -3'
miRNA:   3'- ggaCGUGGUCG------UGCGCGU-CAGC-----------GCUG- -5'
25508 3' -58.6 NC_005337.1 + 9126 0.66 0.759246
Target:  5'- uCCagGUACCGGUACaGCGCGcUCGCcGCu -3'
miRNA:   3'- -GGa-CGUGGUCGUG-CGCGUcAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 5818 0.66 0.759246
Target:  5'- uCCcGCGCCGGUccgGCggugugaaGUGCGGcCGCGACc -3'
miRNA:   3'- -GGaCGUGGUCG---UG--------CGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 12493 0.66 0.759246
Target:  5'- uCC-GCACCGGCGuccaGCaGCAGccgCGUGACc -3'
miRNA:   3'- -GGaCGUGGUCGUg---CG-CGUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 104436 0.66 0.759246
Target:  5'- uCCUGCAgCaacacguggAGCACGCGCAGcacacacaguaCGCGGn -3'
miRNA:   3'- -GGACGUgG---------UCGUGCGCGUCa----------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 64317 0.66 0.759246
Target:  5'- uCUUGCGCguGCccaccACGCGgAG-CGUGGCg -3'
miRNA:   3'- -GGACGUGguCG-----UGCGCgUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 36440 0.66 0.759246
Target:  5'- cCCgGCugCAGC-UGCGCGGgCG-GACg -3'
miRNA:   3'- -GGaCGugGUCGuGCGCGUCaGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 65781 0.66 0.759246
Target:  5'- cCCacgGcCGCCAGCA-GCGCGGcgcccggUGCGGCg -3'
miRNA:   3'- -GGa--C-GUGGUCGUgCGCGUCa------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 8892 0.66 0.759246
Target:  5'- gCC-GCGCCA-CAgGCGCGGcCGCGuCu -3'
miRNA:   3'- -GGaCGUGGUcGUgCGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 50362 0.66 0.7583
Target:  5'- gCCUGgGCCAGCAgGCGCcgcccccguacccGG-CG-GACa -3'
miRNA:   3'- -GGACgUGGUCGUgCGCG-------------UCaGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 93780 0.66 0.749735
Target:  5'- uUCgauCGCCGG-ACGCGCuacgacguGGUCGCGGCu -3'
miRNA:   3'- -GGac-GUGGUCgUGCGCG--------UCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 47607 0.66 0.749735
Target:  5'- --cGaCGCC-GCGCGCGCGGcCGCG-Cu -3'
miRNA:   3'- ggaC-GUGGuCGUGCGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 15348 0.66 0.749735
Target:  5'- gCUGCGCCcGCGCGaCGCuuccaggCGCGcACu -3'
miRNA:   3'- gGACGUGGuCGUGC-GCGuca----GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 51651 0.66 0.749735
Target:  5'- uCCgcgGuCGCCAGCGCcCGCcGUCGCcccugGACg -3'
miRNA:   3'- -GGa--C-GUGGUCGUGcGCGuCAGCG-----CUG- -5'
25508 3' -58.6 NC_005337.1 + 36878 0.66 0.749735
Target:  5'- --gGUugCAGUAgaugcgguuCGCGCGG-CGCGGCg -3'
miRNA:   3'- ggaCGugGUCGU---------GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 112735 0.66 0.749735
Target:  5'- uUUGUaacgccaaauuuGCCGcCGCGCGCGGUCGCuGCu -3'
miRNA:   3'- gGACG------------UGGUcGUGCGCGUCAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 133123 0.66 0.749735
Target:  5'- gCUcCGCCGGCGCGCuccccgcggaGCuGGUCGCGcGCg -3'
miRNA:   3'- gGAcGUGGUCGUGCG----------CG-UCAGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 131159 0.66 0.749735
Target:  5'- --cGCgagGCCGGcCGCGguCGCGGUCGCGGa -3'
miRNA:   3'- ggaCG---UGGUC-GUGC--GCGUCAGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.