miRNA display CGI


Results 101 - 120 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 132962 0.67 0.720628
Target:  5'- uCgUGCACguGCACcugGUGGUCGUGACc -3'
miRNA:   3'- -GgACGUGguCGUGcg-CGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 86498 0.67 0.720628
Target:  5'- --aGCACCccgcccucgaAGUACGCGUuggCGCGGCg -3'
miRNA:   3'- ggaCGUGG----------UCGUGCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 105765 0.67 0.720628
Target:  5'- gCCUGCcccacgcaguGCCGcGCGcCGCGCGccgCGCGGCc -3'
miRNA:   3'- -GGACG----------UGGU-CGU-GCGCGUca-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 108560 0.67 0.720628
Target:  5'- gCCUGaCGCUGGCG-GCGCGGcCG-GACa -3'
miRNA:   3'- -GGAC-GUGGUCGUgCGCGUCaGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 18996 0.67 0.717677
Target:  5'- gCUGCucgacgacgcguucGCCAGaGCGCGC-GUCGCG-Ca -3'
miRNA:   3'- gGACG--------------UGGUCgUGCGCGuCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 2939 0.67 0.714718
Target:  5'- gCCgacGCGCaCGGCGCGCaugagcGCGGUCuccgccucgcacucgGCGACg -3'
miRNA:   3'- -GGa--CGUG-GUCGUGCG------CGUCAG---------------CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 3122 0.67 0.710765
Target:  5'- aCC-GCgGCCGGCcucgcguccaGCGCGCGGUCGauGCa -3'
miRNA:   3'- -GGaCG-UGGUCG----------UGCGCGUCAGCgcUG- -5'
25508 3' -58.6 NC_005337.1 + 76990 0.67 0.710765
Target:  5'- --gGCGCCGcagccGCGCGCGCcGgccccgCGCGGCc -3'
miRNA:   3'- ggaCGUGGU-----CGUGCGCGuCa-----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 122387 0.67 0.710765
Target:  5'- gCgUGCGCgAGguCGUGCuG-CGCGGCg -3'
miRNA:   3'- -GgACGUGgUCguGCGCGuCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 73442 0.67 0.710765
Target:  5'- uCgUGCGCCAGUucuuCGCGCGGcggUGCcGCg -3'
miRNA:   3'- -GgACGUGGUCGu---GCGCGUCa--GCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 24049 0.67 0.710765
Target:  5'- gCUGUGCUcGgGCGaCGCGGcCGCGGCc -3'
miRNA:   3'- gGACGUGGuCgUGC-GCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 75414 0.67 0.710765
Target:  5'- gCUGCGgaCGGCGCGCG-AGcgCGCGAa -3'
miRNA:   3'- gGACGUg-GUCGUGCGCgUCa-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 97653 0.67 0.710765
Target:  5'- gCUGCGCuCGGuCGCGCGCgcgcuccaGGcCGCGGg -3'
miRNA:   3'- gGACGUG-GUC-GUGCGCG--------UCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 542 0.67 0.704814
Target:  5'- gCUGCcggcgccacuccgccACCGGcCGCGCGUAcGcCGCGGCc -3'
miRNA:   3'- gGACG---------------UGGUC-GUGCGCGU-CaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 542 0.67 0.704814
Target:  5'- gCUGCcggcgccacuccgccACCGGcCGCGCGUAcGcCGCGGCc -3'
miRNA:   3'- gGACG---------------UGGUC-GUGCGCGU-CaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 15247 0.67 0.700835
Target:  5'- uCCUggcgGCGCCGGCGCcgaaCGUuGUgGCGACg -3'
miRNA:   3'- -GGA----CGUGGUCGUGc---GCGuCAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 132044 0.67 0.700835
Target:  5'- uCCUcGCGcgguuCCuGCGCGCGC--UCGCGGCc -3'
miRNA:   3'- -GGA-CGU-----GGuCGUGCGCGucAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 11187 0.67 0.700835
Target:  5'- aCUGCGCgaAGUAcauCGUGCGGUgcaCGCGGCu -3'
miRNA:   3'- gGACGUGg-UCGU---GCGCGUCA---GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 6914 0.67 0.700835
Target:  5'- uCC-GCGCCGGCGCGCaGCAucaUCGCcACc -3'
miRNA:   3'- -GGaCGUGGUCGUGCG-CGUc--AGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 15002 0.67 0.700835
Target:  5'- gCUUGgugaGCCGGCGC-CGCAGUuuguucaugUGCGACa -3'
miRNA:   3'- -GGACg---UGGUCGUGcGCGUCA---------GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.