miRNA display CGI


Results 81 - 100 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 29050 0.71 0.463364
Target:  5'- gCCggGCGCCcGCgaGCGCGCAGcUCaGCGGCc -3'
miRNA:   3'- -GGa-CGUGGuCG--UGCGCGUC-AG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 29216 0.68 0.670742
Target:  5'- gCUGCG-CAGCGcCGCGCGGcCG-GGCg -3'
miRNA:   3'- gGACGUgGUCGU-GCGCGUCaGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 29472 0.66 0.777927
Target:  5'- --aGCACCAGC-CGCGgGaaCGCGAg -3'
miRNA:   3'- ggaCGUGGUCGuGCGCgUcaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 29517 0.68 0.660638
Target:  5'- --aGCuucuCCAGCACG-GCGGUcuucgCGCGGCg -3'
miRNA:   3'- ggaCGu---GGUCGUGCgCGUCA-----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 29723 0.75 0.27461
Target:  5'- --cGCGCaCGcGCGCGCGguGUUGCGGCg -3'
miRNA:   3'- ggaCGUG-GU-CGUGCGCguCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 29785 0.68 0.630222
Target:  5'- -gUGCGCgAGCGCGUaGCAGcgccgCGCGAa -3'
miRNA:   3'- ggACGUGgUCGUGCG-CGUCa----GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 30241 0.68 0.670742
Target:  5'- cUCUGUGCgGGuCAgGCGCAGgCGCGGg -3'
miRNA:   3'- -GGACGUGgUC-GUgCGCGUCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 30634 0.77 0.226994
Target:  5'- gCCUGCGCgCAGCcgaggaugGCGCGCGG-CGCGGa -3'
miRNA:   3'- -GGACGUG-GUCG--------UGCGCGUCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 31059 0.66 0.796095
Target:  5'- --gGUugCAGCGgGCcauGCAGUUGcCGACa -3'
miRNA:   3'- ggaCGugGUCGUgCG---CGUCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 31233 0.73 0.376483
Target:  5'- gCUGCAgCAGCAUcaGCAgGUCGCGGCu -3'
miRNA:   3'- gGACGUgGUCGUGcgCGU-CAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 31344 0.74 0.352645
Target:  5'- aCUGCACCAGCACcaGCuuGUGGUCGCa-- -3'
miRNA:   3'- gGACGUGGUCGUG--CG--CGUCAGCGcug -5'
25508 3' -58.6 NC_005337.1 + 33037 0.72 0.418556
Target:  5'- uCCaGCGCgAGCACGCGCGcGgacgccucCGCGACc -3'
miRNA:   3'- -GGaCGUGgUCGUGCGCGU-Ca-------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 33390 0.71 0.463364
Target:  5'- cCCUGCACCGGCugcuccAUGCGC-GUCauCGGCa -3'
miRNA:   3'- -GGACGUGGUCG------UGCGCGuCAGc-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 33523 0.77 0.226994
Target:  5'- gCCgUGCGCCGgcuGCACGCGUcGUCGcCGACg -3'
miRNA:   3'- -GG-ACGUGGU---CGUGCGCGuCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 33582 0.71 0.462443
Target:  5'- --gGCGCCGcgucgcgucggccGCGCGCGCGG-CGCGAa -3'
miRNA:   3'- ggaCGUGGU-------------CGUGCGCGUCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 34890 0.69 0.589721
Target:  5'- --aGCACCGGCAgGUGguGcCGCG-Cg -3'
miRNA:   3'- ggaCGUGGUCGUgCGCguCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 35247 0.68 0.680816
Target:  5'- aCCUgGCGuCCAGCGCcuCGCAGgccgCGCGcACc -3'
miRNA:   3'- -GGA-CGU-GGUCGUGc-GCGUCa---GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 35395 0.67 0.69085
Target:  5'- --cGCGCaguccGCGCGCGCGG-CGCGGu -3'
miRNA:   3'- ggaCGUGgu---CGUGCGCGUCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 35437 0.66 0.768646
Target:  5'- --cGCGCaCGGCGCG-GUGGgCGCGACc -3'
miRNA:   3'- ggaCGUG-GUCGUGCgCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 35542 0.69 0.620077
Target:  5'- uCCaUGacggUCAGCACGCGCAGggcgccgCGCGAg -3'
miRNA:   3'- -GG-ACgu--GGUCGUGCGCGUCa------GCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.