miRNA display CGI


Results 101 - 120 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 36039 0.69 0.569624
Target:  5'- aCUGCccgACguGCucguCGUGcCAGUCGCGGCu -3'
miRNA:   3'- gGACG---UGguCGu---GCGC-GUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 36440 0.66 0.759246
Target:  5'- cCCgGCugCAGC-UGCGCGGgCG-GACg -3'
miRNA:   3'- -GGaCGugGUCGuGCGCGUCaGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 36479 0.68 0.680816
Target:  5'- aCCUGcCGCaCGGCcuugGC-CGCGGcCGCGGCg -3'
miRNA:   3'- -GGAC-GUG-GUCG----UGcGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 36481 0.69 0.593757
Target:  5'- aCCgugGaCACCAGCAcgaagcgguccuucuCGCGCAG-CGCGcGCg -3'
miRNA:   3'- -GGa--C-GUGGUCGU---------------GCGCGUCaGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 36637 0.7 0.520242
Target:  5'- --aGCACCAGCACGCGUcuggacgucccGUcCGCGAa -3'
miRNA:   3'- ggaCGUGGUCGUGCGCGu----------CA-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 36878 0.66 0.749735
Target:  5'- --gGUugCAGUAgaugcgguuCGCGCGG-CGCGGCg -3'
miRNA:   3'- ggaCGugGUCGU---------GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 37005 0.67 0.730417
Target:  5'- --aGCACCAGCACGuCGaAG-CGcCGGCu -3'
miRNA:   3'- ggaCGUGGUCGUGC-GCgUCaGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 37180 0.66 0.78708
Target:  5'- aCUgcgGCACCAGCAUGCGguuGGgcaCGCaGACc -3'
miRNA:   3'- -GGa--CGUGGUCGUGCGCg--UCa--GCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 37215 0.69 0.620077
Target:  5'- aCCgcGCGCC-GCGCGUGC-GUgGCGAUg -3'
miRNA:   3'- -GGa-CGUGGuCGUGCGCGuCAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 37239 0.68 0.669733
Target:  5'- --cGCAUgAGCACGUccacgucGCAGUUGCGGu -3'
miRNA:   3'- ggaCGUGgUCGUGCG-------CGUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 37406 0.66 0.768646
Target:  5'- gCC-GCGCaucCGCGCGgAGUCGCGGa -3'
miRNA:   3'- -GGaCGUGgucGUGCGCgUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 37725 0.74 0.315341
Target:  5'- aCCUGCAgCGGCAucUGCGagaAGUCGaCGGCg -3'
miRNA:   3'- -GGACGUgGUCGU--GCGCg--UCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 38230 0.69 0.569624
Target:  5'- aCCUGUucuucGCCgaguagGGCGgGCGCGGaucauuUCGCGACg -3'
miRNA:   3'- -GGACG-----UGG------UCGUgCGCGUC------AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 38246 0.68 0.650511
Target:  5'- gCCUGacgagACgCGGCGCGCGUucgcgcUCGCGGCg -3'
miRNA:   3'- -GGACg----UG-GUCGUGCGCGuc----AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 38296 0.66 0.768646
Target:  5'- --aGCACCGGUggagggGCGCGCGcGUCGagcgcaacgacCGACg -3'
miRNA:   3'- ggaCGUGGUCG------UGCGCGU-CAGC-----------GCUG- -5'
25508 3' -58.6 NC_005337.1 + 38356 0.67 0.730417
Target:  5'- --aGCGCgaGGCGCGCGCGGcCGCc-- -3'
miRNA:   3'- ggaCGUGg-UCGUGCGCGUCaGCGcug -5'
25508 3' -58.6 NC_005337.1 + 38480 0.72 0.454198
Target:  5'- --cGCGCCgGGCGCGCGC-GUCGCcGAg -3'
miRNA:   3'- ggaCGUGG-UCGUGCGCGuCAGCG-CUg -5'
25508 3' -58.6 NC_005337.1 + 39075 0.67 0.700835
Target:  5'- gCUGUucuucaGCCAGgACGUGCAGcgcUCGCGcuGCa -3'
miRNA:   3'- gGACG------UGGUCgUGCGCGUC---AGCGC--UG- -5'
25508 3' -58.6 NC_005337.1 + 39521 0.68 0.630222
Target:  5'- aCCgcGgGCCAGCu--CGCGGUCGUGGCu -3'
miRNA:   3'- -GGa-CgUGGUCGugcGCGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 39747 0.76 0.262001
Target:  5'- uCCUGCACCcGUACGUGCuGUaCGCGcGCg -3'
miRNA:   3'- -GGACGUGGuCGUGCGCGuCA-GCGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.