miRNA display CGI


Results 121 - 140 of 354 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 40543 0.67 0.730417
Target:  5'- gCUUGCGCCGGCGgGuCGCuggaGGcCGCGuCg -3'
miRNA:   3'- -GGACGUGGUCGUgC-GCG----UCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 40614 0.69 0.609939
Target:  5'- -aUGUACUGGUACGcCGCGGccggcCGCGACu -3'
miRNA:   3'- ggACGUGGUCGUGC-GCGUCa----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 41029 0.67 0.700835
Target:  5'- gCCcGcCACCAGCcgcucCGCGUuGUCGCGGa -3'
miRNA:   3'- -GGaC-GUGGUCGu----GCGCGuCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 41333 0.69 0.579655
Target:  5'- --cGCACCAGCACGCuGUAGaa-CGGCg -3'
miRNA:   3'- ggaCGUGGUCGUGCG-CGUCagcGCUG- -5'
25508 3' -58.6 NC_005337.1 + 41590 0.68 0.650511
Target:  5'- aCgGCccCCAGCGaggGCGUGGUCGUGGCg -3'
miRNA:   3'- gGaCGu-GGUCGUg--CGCGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 41778 0.69 0.619062
Target:  5'- uCUUGCACCAGaagcucaugaaguUGCGCGCcGUCGaGGCg -3'
miRNA:   3'- -GGACGUGGUC-------------GUGCGCGuCAGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 43064 0.68 0.670742
Target:  5'- gCUGacCACCGGCgGCGCGCccguccgcaUCGCGGCg -3'
miRNA:   3'- gGAC--GUGGUCG-UGCGCGuc-------AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 43833 0.69 0.598808
Target:  5'- gCUGCagcggGCCGGCG-GCGCGGUggagaucguguacUGCGACg -3'
miRNA:   3'- gGACG-----UGGUCGUgCGCGUCA-------------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 45156 0.68 0.630222
Target:  5'- cCCgGCGCCAGU-CG-GCAGaacCGCGACa -3'
miRNA:   3'- -GGaCGUGGUCGuGCgCGUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 45321 0.66 0.777927
Target:  5'- aCC-GCGCCcuccGCcucCGCGCGGUcCGCGAg -3'
miRNA:   3'- -GGaCGUGGu---CGu--GCGCGUCA-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 45949 0.73 0.392968
Target:  5'- --cGCGCCGGCGCGCGUGGcguccaCGCuGACg -3'
miRNA:   3'- ggaCGUGGUCGUGCGCGUCa-----GCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 46013 0.66 0.768646
Target:  5'- uCCgGCACCGGCugaaacaugGCGaCGUcGUCGCG-Ca -3'
miRNA:   3'- -GGaCGUGGUCG---------UGC-GCGuCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 46364 0.68 0.660638
Target:  5'- --aGCGCCGGCgcagGCGCGCcAG-CGCGuCa -3'
miRNA:   3'- ggaCGUGGUCG----UGCGCG-UCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 47139 0.66 0.78708
Target:  5'- aCCaGUACCAGUACaucaCGguGUgcuucCGCGACa -3'
miRNA:   3'- -GGaCGUGGUCGUGc---GCguCA-----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 47607 0.66 0.749735
Target:  5'- --cGaCGCC-GCGCGCGCGGcCGCG-Cu -3'
miRNA:   3'- ggaC-GUGGuCGUGCGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 47876 0.75 0.27461
Target:  5'- --cGCGCCGGaCGCGCGCAGcCGCcuGGCg -3'
miRNA:   3'- ggaCGUGGUC-GUGCGCGUCaGCG--CUG- -5'
25508 3' -58.6 NC_005337.1 + 48280 0.68 0.650511
Target:  5'- aCCUGCGgCuGgACcCGCGGUCGCGcCu -3'
miRNA:   3'- -GGACGUgGuCgUGcGCGUCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 50362 0.66 0.7583
Target:  5'- gCCUGgGCCAGCAgGCGCcgcccccguacccGG-CG-GACa -3'
miRNA:   3'- -GGACgUGGUCGUgCGCG-------------UCaGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 50377 0.69 0.609939
Target:  5'- cCCggGCACgGGCGCcugGCGCGGgggCGCGcCg -3'
miRNA:   3'- -GGa-CGUGgUCGUG---CGCGUCa--GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 50617 0.69 0.603865
Target:  5'- aCCUGCGCCGGCugcUGUccaggucaauggacaGCAGcaaCGCGACc -3'
miRNA:   3'- -GGACGUGGUCGu--GCG---------------CGUCa--GCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.