miRNA display CGI


Results 41 - 60 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 120797 0.66 0.777927
Target:  5'- gCUGgAgCGGCGCGaGaCGGUCuGCGACg -3'
miRNA:   3'- gGACgUgGUCGUGCgC-GUCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 120454 0.67 0.69085
Target:  5'- cCCUGCGgggcgcgcuCgAGCGCGCGCuGgaucgCGCgGACa -3'
miRNA:   3'- -GGACGU---------GgUCGUGCGCGuCa----GCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 119848 0.71 0.48198
Target:  5'- cCCgGCGCCAGCgGCG-GCAcGUCGCGcgGCa -3'
miRNA:   3'- -GGaCGUGGUCG-UGCgCGU-CAGCGC--UG- -5'
25508 3' -58.6 NC_005337.1 + 118937 0.66 0.796095
Target:  5'- --cGCGCgGGCGCaGCGUGcGUCGCG-Cg -3'
miRNA:   3'- ggaCGUGgUCGUG-CGCGU-CAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 118795 0.67 0.729442
Target:  5'- --gGCGCCGucgugccGCGCGCGCcGUCgGUGGCc -3'
miRNA:   3'- ggaCGUGGU-------CGUGCGCGuCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 118265 0.68 0.670742
Target:  5'- aCCUGCcgGCC-GCGCGUacggucucGCAGcUGCGACu -3'
miRNA:   3'- -GGACG--UGGuCGUGCG--------CGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 118198 0.67 0.740122
Target:  5'- --cGCGCCGGUggGCGCGgAGcCGCccGACg -3'
miRNA:   3'- ggaCGUGGUCG--UGCGCgUCaGCG--CUG- -5'
25508 3' -58.6 NC_005337.1 + 118089 0.67 0.69085
Target:  5'- uCCUcgggGCucuCCGGCGCGUGguGgagcaaaCGCGGCg -3'
miRNA:   3'- -GGA----CGu--GGUCGUGCGCguCa------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 117980 0.68 0.680816
Target:  5'- aCCgcaGCACCAGCACcCGCccuuGUCccuCGACa -3'
miRNA:   3'- -GGa--CGUGGUCGUGcGCGu---CAGc--GCUG- -5'
25508 3' -58.6 NC_005337.1 + 117221 0.68 0.650511
Target:  5'- --cGCAuCCAGCGgaacgugcagacCGCGCGGaaCGCGACg -3'
miRNA:   3'- ggaCGU-GGUCGU------------GCGCGUCa-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 117094 0.68 0.670742
Target:  5'- aCCgcGCGCCcuGCugGCGCuGUCgGUGAUa -3'
miRNA:   3'- -GGa-CGUGGu-CGugCGCGuCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 116204 0.66 0.796095
Target:  5'- uCCUcUGCCAGCGCGUGUgcgcccAGuUUGCGAUg -3'
miRNA:   3'- -GGAcGUGGUCGUGCGCG------UC-AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 115556 0.71 0.472626
Target:  5'- --gGCGCCAGCGCGCcGCAGcuccUCGCcggGGCc -3'
miRNA:   3'- ggaCGUGGUCGUGCG-CGUC----AGCG---CUG- -5'
25508 3' -58.6 NC_005337.1 + 115499 0.72 0.427308
Target:  5'- -gUGCGCCGGCcuCGCGaGGUCGaCGACc -3'
miRNA:   3'- ggACGUGGUCGu-GCGCgUCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 115350 0.72 0.427308
Target:  5'- gCCUGCugUucgGGUACGCGCucaAGccCGCGACg -3'
miRNA:   3'- -GGACGugG---UCGUGCGCG---UCa-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 115159 0.67 0.740122
Target:  5'- aCCUGgagaUGCCGGCGCcCGCGGaCGcCGGCg -3'
miRNA:   3'- -GGAC----GUGGUCGUGcGCGUCaGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 114373 0.69 0.569624
Target:  5'- aCCUGguCCAGCACGCGgAcuaCGCG-Cu -3'
miRNA:   3'- -GGACguGGUCGUGCGCgUca-GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 114129 0.71 0.472626
Target:  5'- gCCUGCGgCAGCguggaGCGCGCcuUCGcCGACc -3'
miRNA:   3'- -GGACGUgGUCG-----UGCGCGucAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 113141 0.68 0.660638
Target:  5'- --cGCugCGGUACGUGCuGuUCGCGGu -3'
miRNA:   3'- ggaCGugGUCGUGCGCGuC-AGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 113093 0.77 0.22156
Target:  5'- --cGgACCuGCGCGCGCAGguccgCGCGACg -3'
miRNA:   3'- ggaCgUGGuCGUGCGCGUCa----GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.