miRNA display CGI


Results 61 - 80 of 354 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 112735 0.66 0.749735
Target:  5'- uUUGUaacgccaaauuuGCCGcCGCGCGCGGUCGCuGCu -3'
miRNA:   3'- gGACG------------UGGUcGUGCGCGUCAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 110946 0.69 0.620077
Target:  5'- gCUGguUgGGCGUGCGCAGcugCGCGGCc -3'
miRNA:   3'- gGACguGgUCGUGCGCGUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 110354 0.74 0.329896
Target:  5'- --cGCGCCuGCcgcggGCGCGCGGgcgCGCGGCa -3'
miRNA:   3'- ggaCGUGGuCG-----UGCGCGUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 109463 0.67 0.700835
Target:  5'- aCCgUGUGCguGCGCGCGUGGgCGCG-Cu -3'
miRNA:   3'- -GG-ACGUGguCGUGCGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 109446 0.66 0.768646
Target:  5'- --cGCGCCgcucgAGCACgGCGaggaAGUCGCGGa -3'
miRNA:   3'- ggaCGUGG-----UCGUG-CGCg---UCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 108970 0.67 0.691851
Target:  5'- --cGCGCCGGUcgACGCGCGGcccgcccgccgugcgCGCGAa -3'
miRNA:   3'- ggaCGUGGUCG--UGCGCGUCa--------------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 108921 0.72 0.454198
Target:  5'- --gGCACCAGCgagACGCGC---CGCGACg -3'
miRNA:   3'- ggaCGUGGUCG---UGCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 108560 0.67 0.720628
Target:  5'- gCCUGaCGCUGGCG-GCGCGGcCG-GACa -3'
miRNA:   3'- -GGAC-GUGGUCGUgCGCGUCaGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 106023 0.73 0.376483
Target:  5'- --cGCACguGCGCGUGguGccgCGCGACg -3'
miRNA:   3'- ggaCGUGguCGUGCGCguCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 105765 0.67 0.720628
Target:  5'- gCCUGCcccacgcaguGCCGcGCGcCGCGCGccgCGCGGCc -3'
miRNA:   3'- -GGACG----------UGGU-CGU-GCGCGUca-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 105342 0.66 0.777927
Target:  5'- uCCUGCGCCuGuCGCGCGUgaAGgccUC-CGACu -3'
miRNA:   3'- -GGACGUGGuC-GUGCGCG--UC---AGcGCUG- -5'
25508 3' -58.6 NC_005337.1 + 105327 0.71 0.50095
Target:  5'- gUUGC-CCAGCACGUGCGGcggCGgGAg -3'
miRNA:   3'- gGACGuGGUCGUGCGCGUCa--GCgCUg -5'
25508 3' -58.6 NC_005337.1 + 105038 0.7 0.559638
Target:  5'- uUCUGCgACCGGCAgGCGacgccCGGccgCGCGGCg -3'
miRNA:   3'- -GGACG-UGGUCGUgCGC-----GUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 104952 0.71 0.463364
Target:  5'- gCCUGCugcucaccgacuACCGGCACGUgaGCGG-CGUGAUg -3'
miRNA:   3'- -GGACG------------UGGUCGUGCG--CGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 104481 0.72 0.454198
Target:  5'- --aGCACgCggAGCACGCGCAG-CgGCGACa -3'
miRNA:   3'- ggaCGUG-G--UCGUGCGCGUCaG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 104436 0.66 0.759246
Target:  5'- uCCUGCAgCaacacguggAGCACGCGCAGcacacacaguaCGCGGn -3'
miRNA:   3'- -GGACGUgG---------UCGUGCGCGUCa----------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 104239 0.69 0.603865
Target:  5'- --cGCACCAGCcagaagggcacgguCGCGUAcGUCGcCGACg -3'
miRNA:   3'- ggaCGUGGUCGu-------------GCGCGU-CAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 103531 0.68 0.64037
Target:  5'- gCUGcCGCCcgaggAGCGCGCGCuGUacgacuucUGCGACu -3'
miRNA:   3'- gGAC-GUGG-----UCGUGCGCGuCA--------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 103237 0.7 0.539818
Target:  5'- aCCUGcCGCUGGUGCGCGCccgCGCGGu -3'
miRNA:   3'- -GGAC-GUGGUCGUGCGCGucaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 102924 0.7 0.559638
Target:  5'- uCCUGCgACCAcaagcugguGCugGUGCAGU-GCGAg -3'
miRNA:   3'- -GGACG-UGGU---------CGugCGCGUCAgCGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.