miRNA display CGI


Results 81 - 100 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 100684 0.77 0.22156
Target:  5'- --cGCGCC-GCGCGCGCGGccgaCGCGACg -3'
miRNA:   3'- ggaCGUGGuCGUGCGCGUCa---GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 100263 0.68 0.680816
Target:  5'- aCCgggaGCACCuaccGCGCGCGCaAGagGCGGu -3'
miRNA:   3'- -GGa---CGUGGu---CGUGCGCG-UCagCGCUg -5'
25508 3' -58.6 NC_005337.1 + 100222 0.68 0.650511
Target:  5'- gCCgGCGCCGcGUGCGCGUgaUCGCGGu -3'
miRNA:   3'- -GGaCGUGGU-CGUGCGCGucAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 99472 0.68 0.64037
Target:  5'- gCUGgcCACCcGCgACGCGCAGaUgGCGACc -3'
miRNA:   3'- gGAC--GUGGuCG-UGCGCGUC-AgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 98940 0.68 0.64037
Target:  5'- uUCgGCGCCAcGCACGCcugGGUCcGCGGCg -3'
miRNA:   3'- -GGaCGUGGU-CGUGCGcg-UCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 98878 0.7 0.529997
Target:  5'- aCC-GCGCC-GCGCGCGCGGacugCGCG-Cu -3'
miRNA:   3'- -GGaCGUGGuCGUGCGCGUCa---GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 98490 0.66 0.781604
Target:  5'- --cGCGCCGGCggcguccgucaugacACGCGCcacgaucccGGUCGCGcCc -3'
miRNA:   3'- ggaCGUGGUCG---------------UGCGCG---------UCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 97982 0.68 0.660638
Target:  5'- gCUGUucuucgggcgaACgCAGgACGCGCAGU-GCGGCa -3'
miRNA:   3'- gGACG-----------UG-GUCgUGCGCGUCAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 97779 0.72 0.427308
Target:  5'- --cGCGCCgAGCGC-CGCGGcCGCGGCc -3'
miRNA:   3'- ggaCGUGG-UCGUGcGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 97653 0.67 0.710765
Target:  5'- gCUGCGCuCGGuCGCGCGCgcgcuccaGGcCGCGGg -3'
miRNA:   3'- gGACGUG-GUC-GUGCGCG--------UCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 97053 0.73 0.368417
Target:  5'- aCCUcauCGCCAcGCACGCGCGGcgCGCGGu -3'
miRNA:   3'- -GGAc--GUGGU-CGUGCGCGUCa-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 97008 0.67 0.700835
Target:  5'- cCCUGCACCuG-GCGUGCGGguuCGGCa -3'
miRNA:   3'- -GGACGUGGuCgUGCGCGUCagcGCUG- -5'
25508 3' -58.6 NC_005337.1 + 96816 0.69 0.579655
Target:  5'- gUCUGUucucggACCuGCGggUGCGCAGcCGCGGCg -3'
miRNA:   3'- -GGACG------UGGuCGU--GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 95764 0.73 0.368417
Target:  5'- cCCUGCACCAgGCGCGCcCGG--GCGGCc -3'
miRNA:   3'- -GGACGUGGU-CGUGCGcGUCagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 95518 0.67 0.740122
Target:  5'- aCCgcGCACCGGCuCGCcaugaccaggucGCAGUgCGCGGu -3'
miRNA:   3'- -GGa-CGUGGUCGuGCG------------CGUCA-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 95245 0.68 0.630222
Target:  5'- uCCgUGCACUcGUGCGCGCGGcagacgCGCGGg -3'
miRNA:   3'- -GG-ACGUGGuCGUGCGCGUCa-----GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 94786 0.8 0.134335
Target:  5'- aCCaGCAgCAGCGCGCGCGcGUCGcCGGCa -3'
miRNA:   3'- -GGaCGUgGUCGUGCGCGU-CAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 93802 0.7 0.510558
Target:  5'- -gUGCGUCAGCAgcUGCGCAGcUGCGGCg -3'
miRNA:   3'- ggACGUGGUCGU--GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 93780 0.66 0.749735
Target:  5'- uUCgauCGCCGG-ACGCGCuacgacguGGUCGCGGCu -3'
miRNA:   3'- -GGac-GUGGUCgUGCGCG--------UCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 93736 0.69 0.609939
Target:  5'- aCC-GCACCAcCGCGCGC---CGCGGCg -3'
miRNA:   3'- -GGaCGUGGUcGUGCGCGucaGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.