miRNA display CGI


Results 101 - 120 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 93415 0.67 0.700835
Target:  5'- cUCUGCACCgggGGCACGgcgaCGCGuGUCccguGCGGCu -3'
miRNA:   3'- -GGACGUGG---UCGUGC----GCGU-CAG----CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 92870 0.68 0.64037
Target:  5'- cCCgcgGaCGCCGGacgucaucugccCGCGCGCGGUUGcCGGCg -3'
miRNA:   3'- -GGa--C-GUGGUC------------GUGCGCGUCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 92522 0.66 0.777927
Target:  5'- gCCUGCG-CGGCcgccccauggACGCGguG-CGCGAg -3'
miRNA:   3'- -GGACGUgGUCG----------UGCGCguCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 92077 0.71 0.463364
Target:  5'- gCUGUACCGGCagcggcuggACGCGCAGcuggaCGCGGu -3'
miRNA:   3'- gGACGUGGUCG---------UGCGCGUCa----GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 91869 0.68 0.64037
Target:  5'- gCCgGCGCaCAGCGaggcCGCGC-GcCGCGGCg -3'
miRNA:   3'- -GGaCGUG-GUCGU----GCGCGuCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 91731 0.73 0.376483
Target:  5'- gCC-GCACCAGCGCcCGCAG-CGCGuCc -3'
miRNA:   3'- -GGaCGUGGUCGUGcGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 91658 0.68 0.64037
Target:  5'- aCCgcgGUGCCgcacauggcgGGCGCuaGCAGcCGCGACg -3'
miRNA:   3'- -GGa--CGUGG----------UCGUGcgCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 91533 0.72 0.445132
Target:  5'- aCCcGCACC-GCACGCuCGG-CGCGGCc -3'
miRNA:   3'- -GGaCGUGGuCGUGCGcGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 90937 0.72 0.409056
Target:  5'- cCCgGCgGCCAGCGCGUcggcgagccccgaGCAGUaCGUGACg -3'
miRNA:   3'- -GGaCG-UGGUCGUGCG-------------CGUCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 90705 0.67 0.740122
Target:  5'- --aGCACCuccuucaGCGCGCGGUCGgGGu -3'
miRNA:   3'- ggaCGUGGucg----UGCGCGUCAGCgCUg -5'
25508 3' -58.6 NC_005337.1 + 89959 0.66 0.768646
Target:  5'- --gGCGCggccgCAGCACGCGCucgGGggaGCGGCg -3'
miRNA:   3'- ggaCGUG-----GUCGUGCGCG---UCag-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 89863 0.66 0.777927
Target:  5'- gCUGCuucuCCgAGCGCGCGC--UgGCGAUg -3'
miRNA:   3'- gGACGu---GG-UCGUGCGCGucAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 89479 0.67 0.69085
Target:  5'- -aUGCGgCAGCAgauguUGCGCAcGUCGCG-Ca -3'
miRNA:   3'- ggACGUgGUCGU-----GCGCGU-CAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 88967 0.67 0.730417
Target:  5'- --gGCACCccgacGCugGCGaaaCAGUCuGCGACg -3'
miRNA:   3'- ggaCGUGGu----CGugCGC---GUCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 88338 0.72 0.409056
Target:  5'- --cGCGCCGGCGCGCGCgAGaagaccgucuucuUCGCGcGCa -3'
miRNA:   3'- ggaCGUGGUCGUGCGCG-UC-------------AGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 88258 0.67 0.69085
Target:  5'- --cGUGCCGGCGCGCcgGCGGgcgcCGCGGa -3'
miRNA:   3'- ggaCGUGGUCGUGCG--CGUCa---GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 87962 0.69 0.579655
Target:  5'- uCCUGCGCCuGCACgggGCGCuGcUGCGGu -3'
miRNA:   3'- -GGACGUGGuCGUG---CGCGuCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 87920 0.75 0.301276
Target:  5'- gCCUGCGCCGGCGCuucGUGCAcGcCgGCGGCa -3'
miRNA:   3'- -GGACGUGGUCGUG---CGCGU-CaG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 87808 0.72 0.457853
Target:  5'- gCUGC-CCGGgagcucgcggcgcgcCGCGCGCAGaUCGCGAa -3'
miRNA:   3'- gGACGuGGUC---------------GUGCGCGUC-AGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 87618 0.7 0.558641
Target:  5'- gCUGCGCgAuCGCGCGCAGccccgacUCGCGGa -3'
miRNA:   3'- gGACGUGgUcGUGCGCGUC-------AGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.