miRNA display CGI


Results 121 - 140 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 86784 0.66 0.796095
Target:  5'- uCC-GCACgGGCgGCG-GCAGguccCGCGACg -3'
miRNA:   3'- -GGaCGUGgUCG-UGCgCGUCa---GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 86498 0.67 0.720628
Target:  5'- --aGCACCccgcccucgaAGUACGCGUuggCGCGGCg -3'
miRNA:   3'- ggaCGUGG----------UCGUGCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 85977 0.71 0.472626
Target:  5'- --cGCACC-GCAUGCGgAGgCGCGACc -3'
miRNA:   3'- ggaCGUGGuCGUGCGCgUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 85865 0.68 0.670742
Target:  5'- --aGCGCCAGUACGCcgaGCGucuccGUgCGCGGCu -3'
miRNA:   3'- ggaCGUGGUCGUGCG---CGU-----CA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 85847 0.66 0.777005
Target:  5'- --aGCGCCAGCACGUccgcguccgccauGuCGGgCGCGAUc -3'
miRNA:   3'- ggaCGUGGUCGUGCG-------------C-GUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 85758 0.73 0.398847
Target:  5'- gUCUGCugCAGCucauUGCGUauccgcucguugauGGUCGUGACa -3'
miRNA:   3'- -GGACGugGUCGu---GCGCG--------------UCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 84820 0.66 0.796095
Target:  5'- gCCaGCAacgCAGCAuCGCGCA--CGCGGCc -3'
miRNA:   3'- -GGaCGUg--GUCGU-GCGCGUcaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 84731 0.67 0.69085
Target:  5'- cCCgGCGCCGGagcuggucuccCGCGCGCg--CGCGAUg -3'
miRNA:   3'- -GGaCGUGGUC-----------GUGCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 84162 0.66 0.777927
Target:  5'- --cGCGCCAGCGaGCGCccguGUUccaucaGCGACg -3'
miRNA:   3'- ggaCGUGGUCGUgCGCGu---CAG------CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 84002 0.66 0.768646
Target:  5'- gCCUGCACgGGgcacaCugGCGCuucUGCGGCg -3'
miRNA:   3'- -GGACGUGgUC-----GugCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 83951 0.66 0.777927
Target:  5'- --gGUACCgGGCGgucCGCGCAGggcaGCGGCg -3'
miRNA:   3'- ggaCGUGG-UCGU---GCGCGUCag--CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 82971 0.68 0.630222
Target:  5'- --aGCACCAGCGgGUGCgAGUUGCu-- -3'
miRNA:   3'- ggaCGUGGUCGUgCGCG-UCAGCGcug -5'
25508 3' -58.6 NC_005337.1 + 82687 0.66 0.796095
Target:  5'- --aGCGCCAGCGCGagaaGCAGcUCcaaGACc -3'
miRNA:   3'- ggaCGUGGUCGUGCg---CGUC-AGcg-CUG- -5'
25508 3' -58.6 NC_005337.1 + 82528 0.66 0.777927
Target:  5'- uCCaGCGCCAGgGCGgGCAGccugcCGCcaGGCa -3'
miRNA:   3'- -GGaCGUGGUCgUGCgCGUCa----GCG--CUG- -5'
25508 3' -58.6 NC_005337.1 + 82182 0.69 0.599819
Target:  5'- aCCUGCACgCGGC-CGC-CGGgCGCGcACg -3'
miRNA:   3'- -GGACGUG-GUCGuGCGcGUCaGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 82104 0.68 0.64037
Target:  5'- gUCUGCgcgccgucgaaGCCGcGCugGCGCAugagcgCGCGACa -3'
miRNA:   3'- -GGACG-----------UGGU-CGugCGCGUca----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 81754 0.68 0.629208
Target:  5'- gCCgGCGCCGuucuccuGCGCGUGCAgGUUGCG-Ca -3'
miRNA:   3'- -GGaCGUGGU-------CGUGCGCGU-CAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 81537 0.67 0.69085
Target:  5'- aCCUucGCGCgcuuCAGCucgGCGCGCAGcUCGCG-Ca -3'
miRNA:   3'- -GGA--CGUG----GUCG---UGCGCGUC-AGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 80671 0.7 0.5497
Target:  5'- aUCUGCGCgGcgcgcuuccGCGCGCGCAuGUgCGCGAg -3'
miRNA:   3'- -GGACGUGgU---------CGUGCGCGU-CA-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 80608 0.66 0.796095
Target:  5'- cCUUGCgGCC-GCcgACGCGCuGcaUCGCGGCg -3'
miRNA:   3'- -GGACG-UGGuCG--UGCGCGuC--AGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.