miRNA display CGI


Results 61 - 80 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 13070 0.73 0.392968
Target:  5'- gCUGCugCGcGCGgGCGCGGaaGCGGCg -3'
miRNA:   3'- gGACGugGU-CGUgCGCGUCagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 22746 0.73 0.392968
Target:  5'- aCCUGCACgCGGCGgaGCGCGGgcucgguaUGCGGCu -3'
miRNA:   3'- -GGACGUG-GUCGUg-CGCGUCa-------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 128303 0.72 0.445132
Target:  5'- gCCUgGCGCCGucuGCucGCGCGCGGcgcgagCGCGACu -3'
miRNA:   3'- -GGA-CGUGGU---CG--UGCGCGUCa-----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 38480 0.72 0.454198
Target:  5'- --cGCGCCgGGCGCGCGC-GUCGCcGAg -3'
miRNA:   3'- ggaCGUGG-UCGUGCGCGuCAGCG-CUg -5'
25508 3' -58.6 NC_005337.1 + 6627 0.72 0.455111
Target:  5'- --gGCGCCGGCACGcCGCAGgguugaagaccgccgCGCGGu -3'
miRNA:   3'- ggaCGUGGUCGUGC-GCGUCa--------------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 16916 0.71 0.463364
Target:  5'- uUCUGgACCAGCACGgGCucGUCGaggaaGACc -3'
miRNA:   3'- -GGACgUGGUCGUGCgCGu-CAGCg----CUG- -5'
25508 3' -58.6 NC_005337.1 + 33390 0.71 0.463364
Target:  5'- cCCUGCACCGGCugcuccAUGCGC-GUCauCGGCa -3'
miRNA:   3'- -GGACGUGGUCG------UGCGCGuCAGc-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 29050 0.71 0.463364
Target:  5'- gCCggGCGCCcGCgaGCGCGCAGcUCaGCGGCc -3'
miRNA:   3'- -GGa-CGUGGuCG--UGCGCGUC-AG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 115556 0.71 0.472626
Target:  5'- --gGCGCCAGCGCGCcGCAGcuccUCGCcggGGCc -3'
miRNA:   3'- ggaCGUGGUCGUGCG-CGUC----AGCG---CUG- -5'
25508 3' -58.6 NC_005337.1 + 52723 0.71 0.48198
Target:  5'- aCCUGCGCgAGCuGCGCGCcgagcugaAGcgCGCGAa -3'
miRNA:   3'- -GGACGUGgUCG-UGCGCG--------UCa-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 121988 0.72 0.436167
Target:  5'- uCgUGCGCgAGCuccuGCGCGCGGggUGCGACc -3'
miRNA:   3'- -GgACGUGgUCG----UGCGCGUCa-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 61488 0.72 0.436167
Target:  5'- uCCU--GCCGGCGCGCGUuGaUCGCGAUg -3'
miRNA:   3'- -GGAcgUGGUCGUGCGCGuC-AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 52087 0.73 0.392968
Target:  5'- gCCgUGCGcgcCCGGCggccGCGUGCAGgugCGCGACg -3'
miRNA:   3'- -GG-ACGU---GGUCG----UGCGCGUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 3486 0.73 0.400537
Target:  5'- aCUGCGCguGCugGUGCAggagguuGUUGUGGCg -3'
miRNA:   3'- gGACGUGguCGugCGCGU-------CAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 10437 0.73 0.401384
Target:  5'- gCCUGCGCggCGGUGCGCGC-GUCGUG-Cg -3'
miRNA:   3'- -GGACGUG--GUCGUGCGCGuCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 68401 0.73 0.401384
Target:  5'- cCCUGCGCgcgugcguggUAGCGCGCGCcGcCGaCGACg -3'
miRNA:   3'- -GGACGUG----------GUCGUGCGCGuCaGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 88338 0.72 0.409056
Target:  5'- --cGCGCCGGCGCGCGCgAGaagaccgucuucuUCGCGcGCa -3'
miRNA:   3'- ggaCGUGGUCGUGCGCG-UC-------------AGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 90937 0.72 0.409056
Target:  5'- cCCgGCgGCCAGCGCGUcggcgagccccgaGCAGUaCGUGACg -3'
miRNA:   3'- -GGaCG-UGGUCGUGCG-------------CGUCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 59005 0.72 0.418556
Target:  5'- --cGCAUCaagAGCGcCGUGCGGUCGUGGCg -3'
miRNA:   3'- ggaCGUGG---UCGU-GCGCGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 28489 0.72 0.427308
Target:  5'- -aUGCgGCCGcGCgGCGCGCGGUCGCGcgGCa -3'
miRNA:   3'- ggACG-UGGU-CG-UGCGCGUCAGCGC--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.