Results 81 - 100 of 354 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 52163 | 0.7 | 0.510558 |
Target: 5'- -aUGCGCCAGCgcggcuucgacgGCGCGCAGaCGgcCGACc -3' miRNA: 3'- ggACGUGGUCG------------UGCGCGUCaGC--GCUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 12921 | 0.7 | 0.520242 |
Target: 5'- cCCgUGCGCCgaguGGCugGUGCGG-CGCGuCa -3' miRNA: 3'- -GG-ACGUGG----UCGugCGCGUCaGCGCuG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 128687 | 0.7 | 0.529997 |
Target: 5'- cCCcGC-CgGGCACGCGCGcUgGCGACg -3' miRNA: 3'- -GGaCGuGgUCGUGCGCGUcAgCGCUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 98878 | 0.7 | 0.529997 |
Target: 5'- aCC-GCGCC-GCGCGCGCGGacugCGCG-Cu -3' miRNA: 3'- -GGaCGUGGuCGUGCGCGUCa---GCGCuG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 4106 | 0.7 | 0.539818 |
Target: 5'- uCCU-CACC-GCGCGCGCGGagacgCGCgGACa -3' miRNA: 3'- -GGAcGUGGuCGUGCGCGUCa----GCG-CUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 131145 | 0.7 | 0.5497 |
Target: 5'- gCUGUACCGGCGCGUGCuGcacaCGCuGCu -3' miRNA: 3'- gGACGUGGUCGUGCGCGuCa---GCGcUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 26399 | 0.7 | 0.5497 |
Target: 5'- aCUGCGgCAGCagguACGUGC--UCGCGGCg -3' miRNA: 3'- gGACGUgGUCG----UGCGCGucAGCGCUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 52723 | 0.71 | 0.48198 |
Target: 5'- aCCUGCGCgAGCuGCGCGCcgagcugaAGcgCGCGAa -3' miRNA: 3'- -GGACGUGgUCG-UGCGCG--------UCa-GCGCUg -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 115556 | 0.71 | 0.472626 |
Target: 5'- --gGCGCCAGCGCGCcGCAGcuccUCGCcggGGCc -3' miRNA: 3'- ggaCGUGGUCGUGCG-CGUC----AGCG---CUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 29050 | 0.71 | 0.463364 |
Target: 5'- gCCggGCGCCcGCgaGCGCGCAGcUCaGCGGCc -3' miRNA: 3'- -GGa-CGUGGuCG--UGCGCGUC-AG-CGCUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 59005 | 0.72 | 0.418556 |
Target: 5'- --cGCAUCaagAGCGcCGUGCGGUCGUGGCg -3' miRNA: 3'- ggaCGUGG---UCGU-GCGCGUCAGCGCUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 28489 | 0.72 | 0.427308 |
Target: 5'- -aUGCgGCCGcGCgGCGCGCGGUCGCGcgGCa -3' miRNA: 3'- ggACG-UGGU-CG-UGCGCGUCAGCGC--UG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 61488 | 0.72 | 0.436167 |
Target: 5'- uCCU--GCCGGCGCGCGUuGaUCGCGAUg -3' miRNA: 3'- -GGAcgUGGUCGUGCGCGuC-AGCGCUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 121988 | 0.72 | 0.436167 |
Target: 5'- uCgUGCGCgAGCuccuGCGCGCGGggUGCGACc -3' miRNA: 3'- -GgACGUGgUCG----UGCGCGUCa-GCGCUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 128303 | 0.72 | 0.445132 |
Target: 5'- gCCUgGCGCCGucuGCucGCGCGCGGcgcgagCGCGACu -3' miRNA: 3'- -GGA-CGUGGU---CG--UGCGCGUCa-----GCGCUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 38480 | 0.72 | 0.454198 |
Target: 5'- --cGCGCCgGGCGCGCGC-GUCGCcGAg -3' miRNA: 3'- ggaCGUGG-UCGUGCGCGuCAGCG-CUg -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 6627 | 0.72 | 0.455111 |
Target: 5'- --gGCGCCGGCACGcCGCAGgguugaagaccgccgCGCGGu -3' miRNA: 3'- ggaCGUGGUCGUGC-GCGUCa--------------GCGCUg -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 16916 | 0.71 | 0.463364 |
Target: 5'- uUCUGgACCAGCACGgGCucGUCGaggaaGACc -3' miRNA: 3'- -GGACgUGGUCGUGCgCGu-CAGCg----CUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 33390 | 0.71 | 0.463364 |
Target: 5'- cCCUGCACCGGCugcuccAUGCGC-GUCauCGGCa -3' miRNA: 3'- -GGACGUGGUCG------UGCGCGuCAGc-GCUG- -5' |
|||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 77888 | 0.7 | 0.5497 |
Target: 5'- gCCgaagagGCugCAGUacACGCGCAG-CGCGuGCa -3' miRNA: 3'- -GGa-----CGugGUCG--UGCGCGUCaGCGC-UG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home